quantum-espresso/Modules
Leonid Kahle c3a34ea7dc This commit resolves #128 by implementing the stochastic-velocity rescaling (SVR) thermostat into the dynamics module of PW.
Additions have been made to PW/src/dynamics_module.f90, and to PW/src/input.f90 to allow for options svr (or SVR, or Svr) as ion_temperature (IONS card).
Furthermore, 2 functions were added to Modules/random_numbers.f90: the first function to calculate \sum_i R^2, where R is drawn from the normal distribution,
the second to draw a gamma-distributed random number.
No previous code was touched in this commit, only new functions and cases added.
I updated changelog and documentation.

TODO: future issue and commit, if needed, to implementent SVR to fcp.f90 and vcsmd.f90. Both should be fairly straightforward!
2019-09-10 17:27:58 +01:00
..
Makefile More I/O cleanup (or messup) 2019-08-12 12:39:12 +02:00
atom.f90 Atomic grids used to compute integrals limited to rcut=10 everywhere 2018-03-29 21:41:01 +02:00
atomic_number.f90 Reminder: empty strings are nonstandard in fortran, use ' ', not '' 2016-10-13 11:25:10 +00:00
autopilot.f90 Implemented switch from CG to Verlet and from Verlet to CG for cp.x, in the autopilot module. 2018-04-06 16:23:18 +02:00
basic_algebra_routines.f90 Cleanup of __GFORTRAN and __INTEL #ifdefs, replaced by compiler-enabled 2016-10-05 17:48:02 +00:00
becmod.f90 Harmonization of #ifdef's into "#if defined ()" 2018-04-25 22:56:07 +02:00
bfgs_module.f90 Fixes for cell_dofree='z' by LP, release notes updated. i 2019-05-07 15:45:26 +02:00
bspline.f90 A variable declared as "intent(out)" is used before it is assigned a value 2016-02-04 07:50:01 +00:00
bz_form.f90 Minor fixes for pedantic compilation (explicit declarations, character 2018-03-26 18:40:16 +02:00
capital.f90 Since we are in the process of moving stuff around, I think it is a good 2016-01-26 12:51:02 +00:00
cell_base.f90 Added deprecation of funny lattice parameter values 2019-03-24 21:11:11 +01:00
check_stop.f90 Final cleanup of check_stop machinery - only real change in the end: 2017-08-25 09:51:34 +00:00
command_line_options.f90 MAJOR restructuring of the FFTXlib library 2017-08-01 20:31:02 +00:00
compute_dipole.f90 merge develop with rho_updw_mz 2019-01-14 11:40:47 +01:00
constants.f90 I've added a line to print out the crystal density in g/cm^3, the hope is that may help people realize when they do a mistake in the input that results in too small or too large unit cells 2016-12-14 14:38:00 +00:00
constraints_module.f90 More removal of unused variables, or of annoying compiler messages, by SP 2016-04-14 13:04:19 +00:00
control_flags.f90 remove usage of input_parameters variables in add_qexsd_step 2019-03-12 16:20:44 +01:00
correlation_gga.f90 GGA vectorized and libxc functionals included 2019-06-04 07:26:24 +00:00
correlation_lda_lsda.f90 lda back to scalar 2019-05-08 12:17:45 +02:00
coulomb_vcut.f90 bug fixed when checking for cell orthogonality; 2017-01-18 10:57:40 +00:00
cryst_to_car.f90 Since we are in the process of moving stuff around, I think it is a good 2016-01-26 12:51:02 +00:00
date_and_tim.f90 Since we are in the process of moving stuff around, I think it is a good 2016-01-26 12:51:02 +00:00
deviatoric.f90 Since we are in the process of moving stuff around, I think it is a good 2016-01-26 12:51:02 +00:00
dgcxc_drivers.f90 PHonon with GGA-libxc included 2019-09-10 16:31:31 +01:00
dist.f90 Some time ago I modified routine at2celldm so that it computed the value of 2018-12-03 21:39:32 +01:00
dmxc_drivers.f90 Some fixes for PHonon with LDA-libxc 2019-09-10 16:31:31 +01:00
dylmr2.f90 Since we are in the process of moving stuff around, I think it is a good 2016-01-26 12:51:02 +00:00
electrons_base.f90
emend_upf.f90 Fixes for UPF "amendment": line length extended to 1024, filename 2019-01-10 22:07:49 +01:00
environment.f90 Old-style I/O deleted. Everything should work as in 6.2 and 6.3 with default 2018-08-07 19:43:21 +02:00
erf.f90 Since we are in the process of moving stuff around, I think it is a good 2016-01-26 12:51:02 +00:00
exchange_gga.f90 GGA vectorized and libxc functionals included 2019-06-04 07:26:24 +00:00
exchange_lda_lsda.f90 lda back to scalar 2019-05-08 12:17:45 +02:00
expint.f90 Since we are in the process of moving stuff around, I think it is a good 2016-01-26 12:51:02 +00:00
fcp_variables.f90 Default ESM algorithm set to line minimization (mdiis still under development) 2017-08-21 15:02:15 +00:00
fd_gradient.f90 Just in case: ensure that the two arrays are conformant, you never know 2017-10-23 13:23:38 +00:00
fft_base.f90 Nonexistent modul deleted 2017-08-21 12:07:15 +00:00
fft_rho.f90 Cleanup of core charge calculation 2018-08-23 14:22:04 +02:00
fox_init_module.f90 Fox init 2018-02-26 14:11:13 +00:00
fsockets.f90 Added interface with PALENQUE. Following the traditional logic (or lack of it) 2016-08-24 19:54:34 +00:00
funct.f90 Some fixes for PHonon with LDA-libxc 2019-09-10 16:31:31 +01:00
generate_function.f90 Minor cleanup 2018-02-26 15:12:38 +01:00
generate_k_along_lines.f90 Since we are in the process of moving stuff around, I think it is a good 2016-01-26 12:51:02 +00:00
gradutils.f90 fft_qgradient and fft_qgraddot are used by TD-DFPT with Gamma tricks as well 2018-05-29 14:27:16 +02:00
gth.f90 Ooops 2019-06-12 21:10:30 +02:00
gvecw.f90 Module gvecw moved to Modules/; variables for modified kinetic energy merged 2016-01-13 18:33:08 +00:00
has_xml.f90 Since we are in the process of moving stuff around, I think it is a good 2016-01-26 12:51:02 +00:00
hdf5_qe.f90 Hdf5 config 2018-12-11 09:11:52 +00:00
inpfile.f90 Upf IO 2018-02-07 13:09:37 +00:00
input_parameters.f90 update of release notes and small fixes to xml 2019-02-28 15:21:19 +01:00
int_to_char.f90 Since we are in the process of moving stuff around, I think it is a good 2016-01-26 12:51:02 +00:00
invmat.f90 Routines invmat, invmat_complex, dinv_matrix, zinv_matrix merged into a small 2016-01-20 10:34:27 +00:00
io_base.f90 First round of updates to the PW user manual 2019-01-22 10:26:23 +01:00
io_files.f90 Function "restart_dir", with obvious meaning, used everywhere in CP. 2019-08-19 21:59:26 +02:00
io_global.f90 Trying to figure out how to clean up the considerable mess with units ... 2013-02-04 21:42:18 +00:00
ions_base.f90 ion_velocities = 'random' in cp.x now works as expected. 2018-10-22 21:32:33 +02:00
kernel_table.f90 Removal of double "/" at the end of directory names 2017-03-13 21:03:55 +00:00
kind.f90
latgen.f90 Axis for case ibrav=-13 aligned to what is typically found in the literature 2019-09-10 16:31:31 +01:00
libxc.f90 Module in libxc_funcs.f90 wasn't apparently used anywhere 2017-11-26 21:47:41 +00:00
linpack.f90 Since we are in the process of moving stuff around, I think it is a good 2016-01-26 12:51:02 +00:00
make.depend Routine pw_read_schema, reading the xml file, moved to qexsd_module with new 2019-08-13 11:48:51 +02:00
matches.f90 new function match_skipping_spaces fixed 2018-12-15 11:08:29 +01:00
mdiis.f90 Fixes and extensions to ESM, by Minoru. To be completed: compiles and works 2017-08-19 12:59:26 +00:00
metagga.f90 benchmark_libxc updated and a few fixes 2019-06-26 17:43:00 +02:00
mm_dispersion.f90 Minor changes 2019-09-10 17:27:58 +01:00
more_functionals.f90 GGA vectorized and libxc functionals included 2019-06-04 07:26:24 +00:00
mp_bands.f90 removal of unused subroutines in Modules/mp_bands.f90 2017-12-24 00:47:54 +01:00
mp_exx.f90 State machine and memory cleaning in vexx_gamma. 2018-06-17 16:05:07 -05:00
mp_global.f90 Initialization of "ortho" (or "diag") group taken out from mp_startup routine. The reasons for this are 2019-02-07 21:06:21 +01:00
mp_images.f90 More removal of unused variables, or of annoying compiler messages, by SP 2016-04-14 13:04:19 +00:00
mp_pools.f90 Added cleaning of orthpools (used in exx) with a subroutine that only releases the communicators if they had been initialized. 2017-08-24 14:55:40 +00:00
mp_wave.f90 reverts changes in splitwf of Modules/mp_wave.f90 2018-08-06 13:04:42 +02:00
mp_world.f90 fixing compilation for gfortran 4.4.8 and older 2018-04-17 16:23:49 +02:00
noncol.f90
open_close_input_file.f90 Beginning of iotk removal from modules. Routines save_print_counter and 2018-08-11 09:10:55 +02:00
parameters.f90
parser.f90 Last occurrence of __XLF removed 2016-10-03 09:44:13 +00:00
paw_variables.f90
plot_io.f90 Since we are in the process of moving stuff around, I think it is a good 2016-01-26 12:51:02 +00:00
plugin_arguments.f90 Standard F2003 calls to: get_environment_variable, get_command_argument, 2015-09-24 10:24:03 +00:00
plugin_flags.f90 added use_environ to plugin flags and arguments 2014-02-24 16:40:55 +00:00
plugin_variables.f90 missing PUBLIC statement for variable plugin_etot 2014-02-27 11:34:09 +00:00
pseudo_types.f90 Pseudopotential cleanup: 2018-12-31 15:43:38 +01:00
pw_dot.f90 Cleanup of parallel modules: 2019-01-31 15:51:00 +01:00
qeh5_module.f90 fix strange bug of qeh5 with pgi+Mlarge_arrays 2018-08-08 14:55:43 +02:00
qes_bcast_module.f90 fixing printout of ibrav in xml data file 2019-08-02 18:20:53 +00:00
qes_init_module.f90 fixing printout of ibrav in xml data file 2019-08-02 18:20:53 +00:00
qes_libs_module.f90 modified xml printout for vdw element 2019-02-12 18:07:17 +00:00
qes_read_module.f90 fixing printout of ibrav in xml data file 2019-08-02 18:20:53 +00:00
qes_reset_module.f90 fixing printout of ibrav in xml data file 2019-08-02 18:20:53 +00:00
qes_types_module.f90 fixing printout of ibrav in xml data file 2019-08-02 18:20:53 +00:00
qes_write_module.f90 fixing printout of ibrav in xml data file 2019-08-02 18:20:53 +00:00
qexsd.f90 Routine pw_read_schema, reading the xml file, moved to qexsd_module with new 2019-08-13 11:48:51 +02:00
qexsd_copy.f90 fixing printout of ibrav in xml data file 2019-08-02 18:20:53 +00:00
qexsd_init.f90 More I/O cleanup (or messup) 2019-08-12 12:39:12 +02:00
qexsd_input.f90 Some more xml cleanup 2019-08-12 15:17:25 +02:00
qmmm.f90 Cleanup of parallel modules: 2019-01-31 15:51:00 +01:00
radial_gradients.f90 Since we are in the process of moving stuff around, I think it is a good 2016-01-26 12:51:02 +00:00
radial_grids.f90 Minor change enabling quick-and-dirty memory printout for Modules/ as well 2017-11-29 15:37:33 +00:00
random_numbers.f90 This commit resolves #128 by implementing the stochastic-velocity rescaling (SVR) thermostat into the dynamics module of PW. 2019-09-10 17:27:58 +01:00
read_cards.f90 Two bugs in WannierHam, courtesy Ruixiang Zhou 2019-05-16 15:58:54 +02:00
read_input.f90 Old-style I/O deleted. Everything should work as in 6.2 and 6.3 with default 2018-08-07 19:43:21 +02:00
read_namelists.f90 Unexpected side effects of removal of "input_parameters" in phonon: 2019-07-17 16:55:45 +02:00
read_ncpp.f90 Pseudopotential cleanup: 2018-12-31 15:43:38 +01:00
read_pseudo.f90 Why using two lines to do what can be done with a single line? 2019-01-23 16:27:45 +01:00
read_upf_schema.f90 XML and FoX cleanup and simplification 2019-08-10 09:33:39 +02:00
read_upf_v1.f90 Pseudopotential cleanup: 2018-12-31 15:43:38 +01:00
read_upf_v2.f90 XML and FoX cleanup and simplification 2019-08-10 09:33:39 +02:00
read_uspp.f90 Last change wasn't working as expected on old formats. Cleanup. 2019-01-06 22:48:20 +01:00
recips.f90 Since we are in the process of moving stuff around, I think it is a good 2016-01-26 12:51:02 +00:00
recvec.f90 Protect access to gl and igtongl 2019-02-22 11:53:54 +00:00
recvec_subs.f90 Protect access to gl and igtongl 2019-02-22 11:53:54 +00:00
remove_tot_torque.f90 Since we are in the process of moving stuff around, I think it is a good 2016-01-26 12:51:02 +00:00
rgen.f90 Since we are in the process of moving stuff around, I think it is a good 2016-01-26 12:51:02 +00:00
run_info.f90
set_hubbard_l.f90 Minor changes in DFPT+U 2018-11-08 14:16:19 +01:00
set_hubbard_n.f90 Minor changes in DFPT+U 2018-11-08 14:16:19 +01:00
set_signal.f90 ifdef preprocessor macro refactoring (Modules) 2016-09-18 19:42:05 +00:00
set_vdw_corr.f90 merge with upstream/develop and resolve conflicts; warn instead of crash if vdw_corr not known 2019-08-07 12:08:26 +02:00
setqf.f90 routine upf_to_internal modified so that for USPP we set the augmentation charge as an 2016-07-20 11:42:37 +00:00
simpsn.f90 Since we are in the process of moving stuff around, I think it is a good 2016-01-26 12:51:02 +00:00
sort.f90 Since we are in the process of moving stuff around, I think it is a good 2016-01-26 12:51:02 +00:00
space_group.f90 More compilation speedup 2017-03-03 22:06:16 +00:00
sph_bes.f90 Since we are in the process of moving stuff around, I think it is a good 2016-01-26 12:51:02 +00:00
sph_dbes.f90 Since we are in the process of moving stuff around, I think it is a good 2016-01-26 12:51:02 +00:00
splinelib.f90
test_input_file.f90 Since we are in the process of moving stuff around, I think it is a good 2016-01-26 12:51:02 +00:00
timestep.f90
trimcheck.f90 More I/O tweaking for Windows: 2018-05-27 17:58:19 +02:00
tsvdw.f90 One-line patch by Hsin-Yu Ko, Bob diStasio, Dennis Barton, fixing a bug 2019-06-13 21:46:03 +02:00
upf.f90 XML and FoX cleanup and simplification 2019-08-10 09:33:39 +02:00
upf_to_internal.f90 Cleanup of routines rewading pseudopotentials: 2018-12-29 22:09:38 +01:00
uspp.f90 Pseudopotential cleanup: 2018-12-31 15:43:38 +01:00
version.f90 Minor (harmless) bug noticed by Fabrizio in functionals; release-notes 2019-04-04 23:02:46 +02:00
volume.f90 The calculation of unit cell volume was still done using an algorithm 2017-06-07 12:06:04 +00:00
w0gauss.f90 Since we are in the process of moving stuff around, I think it is a good 2016-01-26 12:51:02 +00:00
w1gauss.f90 Since we are in the process of moving stuff around, I think it is a good 2016-01-26 12:51:02 +00:00
wannier_gw.f90 I forgot this. 2016-06-07 14:05:13 +00:00
wannier_new.f90
wave_base.f90 Misc spelling errors 2017-10-25 20:08:57 +00:00
wavefunctions.f90 Rename module wavefunctions_module to wavefunctions 2018-07-12 16:11:48 +02:00
wgauss.f90 Since we are in the process of moving stuff around, I think it is a good 2016-01-26 12:51:02 +00:00
wrappers.f90 Some more minor C-fortran cleanup 2017-07-18 17:35:40 +00:00
write_upf.f90 Upf IO 2018-02-07 13:09:37 +00:00
write_upf_schema.f90 Beginning of iotk removal from modules. Routines save_print_counter and 2018-08-11 09:10:55 +02:00
write_upf_v2.f90 Fix read write upf 2018-08-06 12:31:09 +00:00
ws_base.f90 Routines invmat, invmat_complex, dinv_matrix, zinv_matrix merged into a small 2016-01-20 10:34:27 +00:00
wyckoff.f90 Axis for case ibrav=-13 aligned to what is typically found in the literature 2019-09-10 16:31:31 +01:00
wypos.f90 Ooops, group 33 forgotten ... 2018-11-08 12:15:57 +01:00
xc_gga_drivers.f90 Initialization of energy and potential in xc_drivers added 2019-07-17 17:50:12 +02:00
xc_lda_lsda_drivers.f90 Initialization of energy and potential in xc_drivers added 2019-07-17 17:50:12 +02:00
xc_mgga_drivers.f90 Initialization of energy and potential in xc_drivers added 2019-07-17 17:50:12 +02:00
xc_rVV10.f90 full lsda rho conversion 2019-01-21 12:02:37 +01:00
xc_vdW_DF.f90 master updated 2019-05-08 12:08:43 +02:00
xsf.f90 Harmless bug in xsf files 2019-09-10 17:27:58 +01:00
ylmr2.f90 Modules are legit here, reverted 2017-03-05 08:01:49 +00:00
zdotc_wrapper.f90 Harmonization of #ifdef's into "#if defined ()" 2018-04-25 22:56:07 +02:00
zvscal.f90 Moved here. 2016-03-25 14:43:57 +00:00