Ye Luo
264ce357be
Update manual.
2018-08-03 13:30:56 -05:00
Ye Luo
16fb856dc8
Merge remote-tracking branch 'github/develop' into bgq_config
2018-08-03 13:19:36 -05:00
Ye Luo
c44f853d5e
cmake only once.
2018-08-03 13:18:22 -05:00
Ye Luo
ec1f4dba3b
Prevent CMAKE_EXE_LINKER_FLAGS getting longer.
2018-08-03 13:14:40 -05:00
Paul R. C. Kent
ad0d4e52b7
Merge pull request #953 from markdewing/spline_lapl_space
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Fix BG/Q unit tests
2018-08-03 13:46:24 -04:00
Mark Dewing
aca4715de6
Change BG/Q toolchain so cmake need only run once.
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Put CMAKE_*_FLAGS variables in the cache so they are available immediately to the rest
of the CMake script.
See
https://stackoverflow.com/questions/11423313/cmake-cross-compiling-c-flags-from-toolchain-file-ignored
for more information
2018-08-03 16:56:51 +00:00
Paul R. C. Kent
c97443ff0b
Merge branch 'develop' into spline_lapl_space
2018-08-03 11:45:31 -04:00
Mark Dewing
6d30d418ca
Update bspline test generator script.
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Move the VectorSoaContainer changes from the test to the generation script.
2018-08-03 10:17:05 -05:00
Ye Luo
796a3214a8
Fix spline2 unit test.
2018-08-02 22:26:01 -05:00
Mark Dewing
76553cc13a
Choose better box vectors for test.
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The previous box vectors would lead to a pathological result (rc=0), which would
give an inverse cutoff of inf. On some platforms this becomes a NaN and causes
test failures.
2018-08-02 14:19:30 -05:00
Mark Dewing
b23691b8ec
Fix spline test for SoA and BGQ.
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Increase num_splines to ensure correct alignment on BG/Q.
Rearrange the test accesses to gradients and hessians to match the SoA layout.
Should fix #941
2018-08-02 11:04:00 -05:00
Ye Luo
5b6fb4435e
Merge pull request #949 from jtkrogel/cleanup_csrmc
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Remove CSRMC files
2018-08-02 10:18:21 -05:00
Paul R. C. Kent
e720de157e
Merge branch 'develop' into cleanup_csrmc
2018-08-02 10:18:03 -04:00
Paul R. C. Kent
18e157f8a9
Merge pull request #946 from ye-luo/rename-classes
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Rename base classes
2018-08-02 10:17:48 -04:00
Ye Luo
26f6867364
Merge branch 'develop' into rename-classes
2018-08-02 08:49:11 -05:00
Ye Luo
a1cf158b72
Merge pull request #952 from QMCPACK/master
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Changes from rc v3.5.0
2018-08-02 08:48:50 -05:00
Mark Dewing
ff2a71cded
Allocate more space for laplacian in spline test.
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The laplacian is stored as x, y, and z components during the spline evaluation and
summed into the x component at the end. Need to allocate more space for it in the unit test.
2018-08-02 08:45:52 -05:00
Ye Luo
1009b07ad6
Merge pull request #950 from QMCPACK/rc_350
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Rc 350
2018-08-01 17:48:30 -05:00
Paul R. C. Kent
6b1d7d7b85
Add arxiv link to APW paper
2018-08-01 17:04:03 -04:00
Paul Kent
f3c4229ee4
Nexus testing, typos
2018-08-01 17:02:36 -04:00
Paul R. C. Kent
a72f5c8fe8
Merge branch 'develop' into rename-classes
2018-08-01 16:47:48 -04:00
Paul Kent
2033ea4a9e
Fix link
2018-08-01 16:39:05 -04:00
Paul Kent
0574d6e938
Improve CHANGELOG
2018-08-01 16:37:10 -04:00
Paul Kent
12a520fe84
Changelog for v3.5.0
2018-08-01 15:45:56 -04:00
Paul R. C. Kent
1b028a62fa
Merge pull request #944 from anbenali/Manual_LCAO_features
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Manual for PBC gaussians for gamma Kpoint
2018-08-01 13:46:42 -04:00
Jaron Krogel
59bc47e466
Remove CSRMC files
2018-08-01 13:21:31 -04:00
Paul R. C. Kent
b18d0f2424
Merge branch 'develop' into Manual_LCAO_features
2018-08-01 11:53:07 -04:00
Paul Kent
ad6d6a0ef2
Cleanup, sharpen text, remove duplication
2018-08-01 11:50:14 -04:00
Paul Kent
8430f02650
Fix cross references unrelated to this PR
2018-08-01 09:56:50 -04:00
Ye Luo
fdc7beeb27
Rename OrbitalBuilderBase to WaveFunctionComponentBuilder.
2018-07-31 18:30:37 -05:00
Ye Luo
c4bc4caf9a
Change OrbitalComponent to WaveFunctionComponent.
2018-07-31 18:12:31 -05:00
Ye Luo
01858d468f
Rename (Diff)OrbitalBase to (Diff)WaveFunctionComponent.
2018-07-31 18:09:52 -05:00
Ye Luo
57029a261a
Rename SPOSetBase to SPOSet
2018-07-31 17:53:44 -05:00
anbenali
e0433e58c8
Manual for PBC gaussians for gamma Kpoint
2018-07-30 19:14:52 -05:00
Paul R. C. Kent
86b3d08719
Merge pull request #939 from ye-luo/interchange-ion-electron-in-NLPP
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Remove neighbourlist in distance tables
2018-07-30 18:50:40 -04:00
Ye Luo
ce49086068
Merge branch 'develop' into interchange-ion-electron-in-NLPP
2018-07-30 15:30:16 -04:00
Paul R. C. Kent
7ec504de1b
Merge pull request #940 from ye-luo/BGQ-helper-script
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Fix BGQ runjob helper script
2018-07-30 10:39:02 -04:00
Ye Luo
f76b72cea6
Fix BGQ runjob helper script.
2018-07-30 08:34:56 -05:00
Ye Luo
c95e1103c7
Remove unused PairDataType struct in DistanceTableData
2018-07-29 19:33:55 -05:00
Ye Luo
24c64814d6
Update comments.
2018-07-29 11:42:58 -05:00
Ye Luo
ef5d6c522f
Update Sandbox.
2018-07-29 09:29:28 -05:00
Ye Luo
519939f141
Minor change.
2018-07-29 00:19:07 -05:00
Ye Luo
6c01ac7507
Correct the sign.
2018-07-29 00:01:36 -05:00
Ye Luo
a4325bdd72
Remove the eI neighbor list in SoaDistanceTableBA.
2018-07-28 23:18:06 -05:00
Ye Luo
08b0988d39
Interchange the ion and eletron loops in NLPP.
2018-07-28 21:56:52 -05:00
Mark Dewing
98ca2cc7b5
Merge pull request #938 from ye-luo/unsafe-assume-align-simd-copy
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Remove unsafe alignment assumption in simd::copy_n
2018-07-26 21:37:40 -05:00
Ye Luo
383b9e818d
Remove unsafe alignment assumption in simd::copy_n
2018-07-26 21:09:13 -05:00
Ye Luo
b0f4d0aac0
Merge pull request #933 from PDoakORNL/enable_mkl_docs
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Enable mkl docs
2018-07-19 09:29:36 -05:00
Ye Luo
06b482111e
Merge remote-tracking branch 'github/develop' into enable_mkl_docs
2018-07-19 08:39:21 -05:00
Ye Luo
db273c7a97
Merge pull request #935 from prckent/random_repeatability
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Add deterministic test of mt19937 random generator
2018-07-19 08:39:06 -05:00