phonopy/README.md

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# Phonopy
Phonon code mainly written in python. Phonopy user documentation is found at
http://phonopy.github.io/phonopy/
## Installation
See https://phonopy.github.io/phonopy/install.html.
## Dependency
It is necessary to install `symfc` and `seekpath` either via pip, conda, etc, to
utilize the respective additional features.
## Mailing list for questions
Usual phonopy questions should be sent to phonopy mailing list
(https://sourceforge.net/p/phonopy/mailman/).
## Development
The development of phonopy is managed on the `develop` branch of github phonopy
repository.
- Github issues is the place to discuss about phonopy issues.
- Github pull request is the place to request merging source code.
### Formatting
Formatting rules are found in `pyproject.toml`.
### pre-commit
Pre-commit (https://pre-commit.com/) is mainly used for applying the formatting
rules automatically. Therefore, it is strongly encouraged to use it at or before
git-commit. Pre-commit is set-up and used in the following way:
- Installed by `pip install pre-commit`, `conda install pre_commit` or see
https://pre-commit.com/#install.
- pre-commit hook is installed by `pre-commit install`.
- pre-commit hook is run by `pre-commit run --all-files`.
Unless running pre-commit, pre-commit.ci may push the fix at PR by github
action. In this case, the fix should be merged by the contributor's repository.
### VSCode setting
- Not strictly, but VSCode's `settings.json` may be written like below
```json
"ruff.lint.args": [
"--config=${workspaceFolder}/pyproject.toml",
],
"[python]": {
"editor.defaultFormatter": "charliermarsh.ruff",
"editor.codeActionsOnSave": {
"source.organizeImports": "explicit"
}
},
```
## Documentation
Phonopy user documentation is written using python sphinx. The source files are
stored in `doc` directory. Please see how to write the documentation at
`doc/README.md`.
## How to run tests
Tests are written using pytest. To run tests, pytest has to be installed. The
tests can be run by
```bash
% pytest
```