41 lines
1.1 KiB
Bash
41 lines
1.1 KiB
Bash
#!/bin/bash
|
|
#
|
|
# Copyright 2021 AlQuraishi Laboratory
|
|
#
|
|
# Licensed under the Apache License, Version 2.0 (the "License");
|
|
# you may not use this file except in compliance with the License.
|
|
# You may obtain a copy of the License at
|
|
#
|
|
# http://www.apache.org/licenses/LICENSE-2.0
|
|
#
|
|
# Unless required by applicable law or agreed to in writing, software
|
|
# distributed under the License is distributed on an "AS IS" BASIS,
|
|
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
|
# See the License for the specific language governing permissions and
|
|
# limitations under the License.
|
|
#
|
|
# Downloads and unzips all required data for AlphaFold.
|
|
#
|
|
# Usage: bash download_all_data.sh /path/to/download/directory
|
|
set -e
|
|
|
|
DOWNLOAD_DIR="$1"
|
|
ROOT_DIR="${DOWNLOAD_DIR}/mmseqs_dbs"
|
|
mkdir -p $ROOT_DIR
|
|
|
|
for f in $(ls ${DOWNLOAD_DIR}/*.tar*)
|
|
do
|
|
tar --extract --verbose --file="${f}" \
|
|
--directory=$ROOT_DIR
|
|
rm "${f}"
|
|
BASENAME="$(basename ${f%%.*})"
|
|
DB_NAME="${BASENAME}_db"
|
|
OLD_PWD=$(pwd)
|
|
cd $ROOT_DIR
|
|
mmseqs tsv2exprofiledb "${BASENAME}" "${DB_NAME}"
|
|
mmseqs createindex "${DB_NAME}" "${DOWNLOAD_DIR}/tmp/"
|
|
cd "${OLD_PWD}"
|
|
done
|
|
|
|
|