quantum-espresso/test-suite/cp_o2/benchmark.out.git.inp=o2-us...

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Program CP v.6.1 (svn rev. 13369) starts on 2Mar2017 at 23:33:38
This program is part of the open-source Quantum ESPRESSO suite
for quantum simulation of materials; please cite
"P. Giannozzi et al., J. Phys.:Condens. Matter 21 395502 (2009);
URL http://www.quantum-espresso.org",
in publications or presentations arising from this work. More details at
http://www.quantum-espresso.org/quote
Serial multi-threaded version, running on 4 processor cores
Dumping input parameters
Reading input from o2-us-para-pbe-1.in
Job Title: O2 Crystal
Atomic Pseudopotentials Parameters
----------------------------------
Reading pseudopotential for specie # 1 from file :
/home/fs395/scratch/QE/espresso/test-suite/..//pseudo/O.pbe-rrkjus.UPF
file type is UPF v.1
file O.pbe-rrkjus.UPF: wavefunction(s) 2S renormalized
Main Simulation Parameters (from input)
---------------------------------------
Restart Mode = -1 from_scratch
Number of MD Steps = 50
Print out every 10 MD Steps
Reads from unit = 53
Writes to unit = 53
MD Simulation time step = 12.00
Electronic fictitious mass (emass) = 800.00
emass cut-off = 1.80
Simulation Cell Parameters (from input)
external pressure = 0.00 [KBar]
wmass (calculated) = 4432.73 [AU]
ibrav = 14
alat = 12.00000000
a1 = 12.00000000 0.00000000 0.00000000
a2 = 0.00000000 12.00000000 0.00000000
a3 = 0.00000000 0.00000000 12.00000000
b1 = 0.08333333 0.00000000 0.00000000
b2 = 0.00000000 0.08333333 0.00000000
b3 = 0.00000000 0.00000000 0.08333333
omega = 1728.00000000
Energy Cut-offs
---------------
Ecutwfc = 30.0 Ry, Ecutrho = 240.0 Ry, Ecuts = 120.0 Ry
Gcutwfc = 10.5 , Gcutrho = 29.6 Gcuts = 20.9
NOTA BENE: refg, mmx = 0.050000 5760
Eigenvalues calculated without the kinetic term contribution
Orthog. with lagrange multipliers : eps = 0.10E-08, max = 30
verlet algorithm for electron dynamics
with friction frice = 0.2000 , grease = 1.0000
Electron dynamics : the temperature is not controlled
initial random displacement of el. coordinates with amplitude= 0.020000
Electronic states
-----------------
Local Spin Density calculation
Number of Electrons= 12
Spins up = 7, occupations:
1.00 1.00 1.00 1.00 1.00 1.00 1.00
Spins down = 5, occupations:
1.00 1.00 1.00 1.00 1.00
Exchange and correlations functionals
-------------------------------------
Exchange-correlation = SLA PW PBE PBE ( 1 4 3 4 0 0)
Ions Simulation Parameters
--------------------------
Ions are not allowed to move
Ionic position (from input)
sorted by specie, and converted to real a.u. coordinates
Species 1 atoms = 2 mass = 29166.22 (a.u.), 16.00 (amu) rcmax = 1.00 (a.u.)
3.260309 2.287244 5.163090
3.260309 2.287244 7.479148
Ionic position read from input file
Cell Dynamics Parameters (from STDIN)
-------------------------------------
internal stress tensor calculated
Starting cell generated from CELLDM
Constant VOLUME Molecular dynamics
cell parameters are not allowed to move
Verbosity: iverbosity = 1
Simulation dimensions initialization
------------------------------------
unit vectors of full simulation cell
in real space: in reciprocal space (units 2pi/alat):
1 12.0000 0.0000 0.0000 1.0000 0.0000 0.0000
2 0.0000 12.0000 0.0000 0.0000 1.0000 0.0000
3 0.0000 0.0000 12.0000 0.0000 0.0000 1.0000
G-vector sticks info
--------------------
sticks: dense smooth PW G-vecs: dense smooth PW
Sum 2749 1369 349 108671 38401 4801
Real Mesh
---------
Global Dimensions Local Dimensions Processor Grid
.X. .Y. .Z. .X. .Y. .Z. .X. .Y. .Z.
60 60 60 60 60 60 1 1 1
Array leading dimensions ( nr1x, nr2x, nr3x ) = 60 60 60
Local number of cell to store the grid ( nrxx ) = 216000
Number of x-y planes for each processors:
nr3l = 60
Smooth Real Mesh
----------------
Global Dimensions Local Dimensions Processor Grid
.X. .Y. .Z. .X. .Y. .Z. .X. .Y. .Z.
45 45 45 45 45 45 1 1 1
Array leading dimensions ( nr1x, nr2x, nr3x ) = 45 45 45
Local number of cell to store the grid ( nrxx ) = 91125
Number of x-y planes for each processors:
nr3sl = 45
Small Box Real Mesh
-------------------
Global Dimensions Local Dimensions Processor Grid
.X. .Y. .Z. .X. .Y. .Z. .X. .Y. .Z.
24 24 24 24 24 24 1 1 1
Array leading dimensions ( nr1x, nr2x, nr3x ) = 24 24 24
Local number of cell to store the grid ( nrxx ) = 13824
unit vectors of box grid cell
in real space: in reciprocal space:
4.8000 0.0000 0.0000 1.0000 0.0000 0.0000
0.0000 4.8000 0.0000 0.0000 1.0000 0.0000
0.0000 0.0000 4.8000 0.0000 0.0000 1.0000
Reciprocal Space Mesh
---------------------
Large Mesh
Global(ngm_g) MinLocal MaxLocal Average
54336 54336 54336 54336.00
Smooth Mesh
Global(ngms_g) MinLocal MaxLocal Average
19201 19201 19201 19201.00
Wave function Mesh
Global(ngw_g) MinLocal MaxLocal Average
2401 2401 2401 2401.00
Small box Mesh
ngb = 3490 not distributed to processors
System geometry initialization
------------------------------
ibrav = 14 cell parameters read from input file
unit vectors of box grid cell
in real space: in reciprocal space:
4.8000 0.0000 0.0000 1.0000 0.0000 0.0000
0.0000 4.8000 0.0000 0.0000 1.0000 0.0000
0.0000 0.0000 4.8000 0.0000 0.0000 1.0000
Pseudopotentials initialization
-------------------------------
nlinit nh(is), ngb, is, kkbeta, lmaxq = 8 3490 1 865 3
qqq
-0.1022 0.5410 0.0000 0.0000
0.5410 -2.5883 0.0000 0.0000
0.0000 0.0000 0.2297 0.2861
0.0000 0.0000 0.2861 0.3565
Common initialization
Specie: 1
1 indv= 1 ang. mom= 0
2 indv= 2 ang. mom= 0
3 indv= 3 ang. mom= 1
4 indv= 3 ang. mom= 1
5 indv= 3 ang. mom= 1
6 indv= 4 ang. mom= 1
7 indv= 4 ang. mom= 1
8 indv= 4 ang. mom= 1
dion
0.4798 -1.3236 0.0000 0.0000
-1.3236 2.2757 0.0000 0.0000
0.0000 0.0000 0.6278 0.8512
0.0000 0.0000 0.8512 1.1500
Cell parameters from input file are used in electron mass preconditioning
init_tpiba2= 0.27415568
Short Legend and Physical Units in the Output
---------------------------------------------
NFI [int] - step index
EKINC [HARTREE A.U.] - kinetic energy of the fictitious electronic dynamics
TEMPH [K] - Temperature of the fictitious cell dynamics
TEMP [K] - Ionic temperature
ETOT [HARTREE A.U.] - Scf total energy (Kohn-Sham hamiltonian)
ENTHAL [HARTREE A.U.] - Enthalpy ( ETOT + P * V )
ECONS [HARTREE A.U.] - Enthalpy + kinetic energy of ions and cell
ECONT [HARTREE A.U.] - Constant of motion for the CP lagrangian
Wave Initialization: random initial wave-functions
Occupation number from init
spin = 1 nbnd = 7
1.00 1.00 1.00 1.00 1.00 1.00 1.00
spin = 2 nbnd = 5
1.00 1.00 1.00 1.00 1.00
formf: eself= 28.72384
formf: vps(g=0)= -0.0087653 rhops(g=0)= -0.0034722
formf: sum_g vps(g)= -2.4887968 sum_g rhops(g)= -0.5404975
Delta V(G=0): 0.021817Ry, 0.593660eV
from rhoofr: total integrated electronic density
spin up
in g-space = 7.000000 in r-space = 7.000000
spin down
in g-space = 5.000000 in r-space = 5.000000
Total Electronic Pressure (GPa) 184.91763 0
nfi ekinc temph tempp etot enthal econs econt vnhh xnhh0 vnhp xnhp0
1 2.544441253584065 0.0 0.00 11.231665727177 11.231665727177 11.231665727177 13.776106980761 0.0000 0.0000 0.0000 0.0000
2 7.028304435212998 0.0 0.00 3.080352501796 3.080352501796 3.080352501796 10.108656937009 0.0000 0.0000 0.0000 0.0000
3 10.603192624967038 0.0 0.00 -8.339735932317 -8.339735932317 -8.339735932317 2.263456692650 0.0000 0.0000 0.0000 0.0000
4 10.386596832630541 0.0 0.00 -16.535428859522 -16.535428859522 -16.535428859522 -6.148832026891 0.0000 0.0000 0.0000 0.0000
5 7.957969921127853 0.0 0.00 -21.225408151154 -21.225408151154 -21.225408151154 -13.267438230027 0.0000 0.0000 0.0000 0.0000
6 5.698213093340295 0.0 0.00 -24.346802174791 -24.346802174791 -24.346802174791 -18.648589081450 0.0000 0.0000 0.0000 0.0000
7 3.943425477904910 0.0 0.00 -26.395800550038 -26.395800550038 -26.395800550038 -22.452375072133 0.0000 0.0000 0.0000 0.0000
8 2.632448817783268 0.0 0.00 -27.646024703783 -27.646024703783 -27.646024703783 -25.013575886000 0.0000 0.0000 0.0000 0.0000
9 1.775538534440682 0.0 0.00 -28.508978428219 -28.508978428219 -28.508978428219 -26.733439893778 0.0000 0.0000 0.0000 0.0000
10 1.272892014405903 0.0 0.00 -29.209566615746 -29.209566615746 -29.209566615746 -27.936674601340 0.0000 0.0000 0.0000 0.0000
11 0.965625294009185 0.0 0.00 -29.793229444761 -29.793229444761 -29.793229444761 -28.827604150751 0.0000 0.0000 0.0000 0.0000
12 0.744371172274949 0.0 0.00 -30.253525746614 -30.253525746614 -30.253525746614 -29.509154574339 0.0000 0.0000 0.0000 0.0000
13 0.562615938322531 0.0 0.00 -30.590766310175 -30.590766310175 -30.590766310175 -30.028150371853 0.0000 0.0000 0.0000 0.0000
14 0.410321439840864 0.0 0.00 -30.822479102542 -30.822479102542 -30.822479102542 -30.412157662702 0.0000 0.0000 0.0000 0.0000
15 0.289606473156260 0.0 0.00 -30.976456748278 -30.976456748278 -30.976456748278 -30.686850275121 0.0000 0.0000 0.0000 0.0000
16 0.201365324597364 0.0 0.00 -31.080404307183 -31.080404307183 -31.080404307183 -30.879038982585 0.0000 0.0000 0.0000 0.0000
17 0.141319817801599 0.0 0.00 -31.154714347810 -31.154714347810 -31.154714347810 -31.013394530008 0.0000 0.0000 0.0000 0.0000
18 0.101912069183665 0.0 0.00 -31.211069775609 -31.211069775609 -31.211069775609 -31.109157706425 0.0000 0.0000 0.0000 0.0000
19 0.075725282223621 0.0 0.00 -31.255076895865 -31.255076895865 -31.255076895865 -31.179351613642 0.0000 0.0000 0.0000 0.0000
20 0.057533334924267 0.0 0.00 -31.289605273980 -31.289605273980 -31.289605273980 -31.232071939056 0.0000 0.0000 0.0000 0.0000
21 0.044449344948723 0.0 0.00 -31.316834969253 -31.316834969253 -31.316834969253 -31.272385624305 0.0000 0.0000 0.0000 0.0000
22 0.035078664359823 0.0 0.00 -31.338869351723 -31.338869351723 -31.338869351723 -31.303790687364 0.0000 0.0000 0.0000 0.0000
23 0.028639297984422 0.0 0.00 -31.357604106275 -31.357604106275 -31.357604106275 -31.328964808291 0.0000 0.0000 0.0000 0.0000
24 0.024467678689278 0.0 0.00 -31.374467384540 -31.374467384540 -31.374467384540 -31.349999705851 0.0000 0.0000 0.0000 0.0000
25 0.021893722742726 0.0 0.00 -31.390322553631 -31.390322553631 -31.390322553631 -31.368428830888 0.0000 0.0000 0.0000 0.0000
26 0.020305685180663 0.0 0.00 -31.405561433193 -31.405561433193 -31.405561433193 -31.385255748012 0.0000 0.0000 0.0000 0.0000
27 0.019240749898187 0.0 0.00 -31.420293532369 -31.420293532369 -31.420293532369 -31.401052782471 0.0000 0.0000 0.0000 0.0000
28 0.018417835294768 0.0 0.00 -31.434522267254 -31.434522267254 -31.434522267254 -31.416104431959 0.0000 0.0000 0.0000 0.0000
29 0.017705874431184 0.0 0.00 -31.448248324545 -31.448248324545 -31.448248324545 -31.430542450114 0.0000 0.0000 0.0000 0.0000
30 0.017062263487475 0.0 0.00 -31.461499573454 -31.461499573454 -31.461499573454 -31.444437309966 0.0000 0.0000 0.0000 0.0000
31 0.016478601488040 0.0 0.00 -31.474320480476 -31.474320480476 -31.474320480476 -31.457841878988 0.0000 0.0000 0.0000 0.0000
32 0.015951252497421 0.0 0.00 -31.486754877624 -31.486754877624 -31.486754877624 -31.470803625127 0.0000 0.0000 0.0000 0.0000
33 0.015474011954007 0.0 0.00 -31.498838771032 -31.498838771032 -31.498838771032 -31.483364759078 0.0000 0.0000 0.0000 0.0000
34 0.015041090184494 0.0 0.00 -31.510603171713 -31.510603171713 -31.510603171713 -31.495562081529 0.0000 0.0000 0.0000 0.0000
35 0.014650504172414 0.0 0.00 -31.522080043530 -31.522080043530 -31.522080043530 -31.507429539358 0.0000 0.0000 0.0000 0.0000
36 0.014304068374229 0.0 0.00 -31.533305701257 -31.533305701257 -31.533305701257 -31.519001632882 0.0000 0.0000 0.0000 0.0000
37 0.014004778793067 0.0 0.00 -31.544320087096 -31.544320087096 -31.544320087096 -31.530315308302 0.0000 0.0000 0.0000 0.0000
38 0.013753781055048 0.0 0.00 -31.555163195947 -31.555163195947 -31.555163195947 -31.541409414892 0.0000 0.0000 0.0000 0.0000
39 0.013548393333802 0.0 0.00 -31.565870591860 -31.565870591860 -31.565870591860 -31.552322198527 0.0000 0.0000 0.0000 0.0000
40 0.013381505559177 0.0 0.00 -31.576469372587 -31.576469372587 -31.576469372587 -31.563087867028 0.0000 0.0000 0.0000 0.0000
41 0.013242013238015 0.0 0.00 -31.586975185619 -31.586975185619 -31.586975185619 -31.573733172381 0.0000 0.0000 0.0000 0.0000
42 0.013115831180169 0.0 0.00 -31.597390426910 -31.597390426910 -31.597390426910 -31.584274595730 0.0000 0.0000 0.0000 0.0000
43 0.012987169882328 0.0 0.00 -31.607703645417 -31.607703645417 -31.607703645417 -31.594716475534 0.0000 0.0000 0.0000 0.0000
44 0.012839895982808 0.0 0.00 -31.617890089885 -31.617890089885 -31.617890089885 -31.605050193902 0.0000 0.0000 0.0000 0.0000
45 0.012658864159968 0.0 0.00 -31.627913318671 -31.627913318671 -31.627913318671 -31.615254454511 0.0000 0.0000 0.0000 0.0000
46 0.012431119325308 0.0 0.00 -31.637727708555 -31.637727708555 -31.637727708555 -31.625296589230 0.0000 0.0000 0.0000 0.0000
47 0.012146867795051 0.0 0.00 -31.647281614249 -31.647281614249 -31.647281614249 -31.635134746454 0.0000 0.0000 0.0000 0.0000
48 0.011800132502271 0.0 0.00 -31.656520869024 -31.656520869024 -31.656520869024 -31.644720736522 0.0000 0.0000 0.0000 0.0000
49 0.011389041146195 0.0 0.00 -31.665392295604 -31.665392295604 -31.665392295604 -31.654003254457 0.0000 0.0000 0.0000 0.0000
* Physical Quantities at step: 50
Pressure of Nuclei (GPa) 0.00000 50
Pressure Total (GPa) 1.45051 50
Spin contamination: s(s+1)= 2.01 (Slater) 2.01 (Becke) 2.00 (expected)
total energy = -31.67384691668 Hartree a.u.
kinetic energy = 13.34678 Hartree a.u.
electrostatic energy = -28.31293 Hartree a.u.
esr = 0.31950 Hartree a.u.
eself = 28.72384 Hartree a.u.
pseudopotential energy = -16.86562 Hartree a.u.
n-l pseudopotential energy = 6.99035 Hartree a.u.
exchange-correlation energy = -6.83243 Hartree a.u.
average potential = 0.00000 Hartree a.u.
Eigenvalues (eV), kp = 1 , spin = 1
-32.89 -20.44 -13.87 -13.28 -13.02 -7.27 -6.38
Eigenvalues (eV), kp = 1 , spin = 2
-31.46 -18.56 -12.39 -11.46 -9.62
Allocated memory (kb) = 110872
CELL_PARAMETERS
12.00000000 0.00000000 0.00000000
0.00000000 12.00000000 0.00000000
0.00000000 0.00000000 12.00000000
System Density [g/cm^3] : 0.2075203704
System Volume [A.U.^3] : 1728.0000000000
Center of mass square displacement (a.u.): 0.000000
Total stress (GPa)
0.02081104 0.69265707 -0.28209886
0.69265707 -0.56106314 0.10267836
-0.28209980 0.10267868 4.89178494
ATOMIC_POSITIONS
O 0.32603090000000E+01 0.22872440000000E+01 0.51630900000000E+01
O 0.32603090000000E+01 0.22872440000000E+01 0.74791480000000E+01
ATOMIC_VELOCITIES
O 0.00000000000000E+00 0.00000000000000E+00 0.00000000000000E+00
O 0.00000000000000E+00 0.00000000000000E+00 0.00000000000000E+00
Forces acting on atoms (au):
O 0.16414992988806E-01 -0.57063212120727E-02 -0.11061058357597E+00
O -0.13061832804338E-01 0.81547877605112E-03 0.11874821150883E+00
Partial temperatures (for each ionic specie)
Species Temp (K) Mean Square Displacement (a.u.)
1 0.00E+00 0.0000E+00
50 0.010915740337841 0.0 0.00 -31.673846916682 -31.673846916682 -31.673846916682 -31.662931176344 0.0000 0.0000 0.0000 0.0000
writing restart file: /home/fs395/scratch/QE/espresso/test-suite/..//tempdir/o2_53.save
restart file written in 0.195 sec.
Averaged Physical Quantities
accumulated this run
ekinc : 1.15822 1.15822 (AU)
ekin : 13.44787 13.44787 (AU)
epot : -48.34856 -48.34856 (AU)
total energy : -28.43715 -28.43715 (AU)
temperature : 0.00000 0.00000 (K )
enthalpy : -28.43715 -28.43715 (AU)
econs : -28.43715 -28.43715 (AU)
pressure : 12.16117 12.16117 (Gpa)
volume : 1728.00000 1728.00000 (AU)
Called by MAIN_LOOP:
initialize : 5.61s CPU 1.97s WALL ( 1 calls)
main_loop : 43.00s CPU 34.09s WALL ( 50 calls)
cpr_total : 43.03s CPU 34.35s WALL ( 1 calls)
Called by INIT_RUN:
Called by CPR:
cpr_md : 43.03s CPU 34.35s WALL ( 50 calls)
move_electro : 41.63s CPU 33.37s WALL ( 50 calls)
Called by move_electrons:
rhoofr : 7.05s CPU 5.56s WALL ( 51 calls)
vofrho : 29.24s CPU 25.78s WALL ( 51 calls)
dforce : 3.50s CPU 1.03s WALL ( 306 calls)
calphi : 0.11s CPU 0.03s WALL ( 51 calls)
newd : 1.90s CPU 1.47s WALL ( 51 calls)
nlfl : 0.00s CPU 0.00s WALL ( 51 calls)
Called by ortho:
ortho_iter : 0.04s CPU 0.01s WALL ( 102 calls)
rsg : 0.00s CPU 0.00s WALL ( 102 calls)
rhoset : 0.07s CPU 0.02s WALL ( 102 calls)
sigset : 0.07s CPU 0.02s WALL ( 102 calls)
tauset : 0.07s CPU 0.02s WALL ( 102 calls)
ortho : 0.66s CPU 0.17s WALL ( 51 calls)
updatc : 0.04s CPU 0.01s WALL ( 51 calls)
Small boxes:
rhov : 0.42s CPU 0.43s WALL ( 51 calls)
fftb : 0.88s CPU 0.74s WALL ( 3162 calls)
Low-level routines:
prefor : 0.01s CPU 0.01s WALL ( 51 calls)
nlfq : 0.61s CPU 0.15s WALL ( 51 calls)
nlsm1 : 0.40s CPU 0.10s WALL ( 154 calls)
nlsm2 : 0.60s CPU 0.15s WALL ( 51 calls)
fft : 7.31s CPU 5.79s WALL ( 1173 calls)
ffts : 0.67s CPU 0.23s WALL ( 102 calls)
fftw : 3.51s CPU 1.31s WALL ( 918 calls)
betagx : 2.71s CPU 0.70s WALL ( 1 calls)
qradx : 1.54s CPU 0.40s WALL ( 1 calls)
gram : 0.00s CPU 0.00s WALL ( 1 calls)
nlinit : 4.69s CPU 1.22s WALL ( 1 calls)
init_dim : 0.02s CPU 0.02s WALL ( 1 calls)
newnlinit : 0.04s CPU 0.02s WALL ( 1 calls)
from_scratch : 0.90s CPU 0.71s WALL ( 1 calls)
strucf : 0.00s CPU 0.00s WALL ( 1 calls)
calbec : 0.00s CPU 0.00s WALL ( 52 calls)
CP : 48.68s CPU 36.36s WALL
This run was terminated on: 23:34:15 2Mar2017
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JOB DONE.
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