quantum-espresso/test-suite/cp_h2o/benchmark.out.git.inp=h2o-m...

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Program CP v.6.1 (svn rev. 13369) starts on 2Mar2017 at 23:31:29
This program is part of the open-source Quantum ESPRESSO suite
for quantum simulation of materials; please cite
"P. Giannozzi et al., J. Phys.:Condens. Matter 21 395502 (2009);
URL http://www.quantum-espresso.org",
in publications or presentations arising from this work. More details at
http://www.quantum-espresso.org/quote
Serial multi-threaded version, running on 4 processor cores
Dumping input parameters
Reading input from h2o-mt-blyp-1.in
Job Title: Water Molecule
Atomic Pseudopotentials Parameters
----------------------------------
Reading pseudopotential for specie # 1 from file :
/home/fs395/scratch/QE/espresso/test-suite/..//pseudo/O.blyp-mt.UPF
file type is UPF v.1
Reading pseudopotential for specie # 2 from file :
/home/fs395/scratch/QE/espresso/test-suite/..//pseudo/H.blyp-vbc.UPF
file type is UPF v.1
Main Simulation Parameters (from input)
---------------------------------------
Restart Mode = -1 from_scratch
Number of MD Steps = 100
Print out every 100 MD Steps
Reads from unit = 51
Writes to unit = 51
MD Simulation time step = 5.00
Electronic fictitious mass (emass) = 400.00
emass cut-off = 2.50
Simulation Cell Parameters (from input)
external pressure = 0.00 [KBar]
wmass (calculated) = 2493.41 [AU]
ibrav = 14
alat = 12.00000000
a1 = 12.00000000 0.00000000 0.00000000
a2 = 0.00000000 12.00000000 0.00000000
a3 = 0.00000000 0.00000000 12.00000000
b1 = 0.08333333 0.00000000 0.00000000
b2 = 0.00000000 0.08333333 0.00000000
b3 = 0.00000000 0.00000000 0.08333333
omega = 1728.00000000
Energy Cut-offs
---------------
Ecutwfc = 80.0 Ry, Ecutrho = 320.0 Ry, Ecuts = 320.0 Ry
Gcutwfc = 17.1 , Gcutrho = 34.2 Gcuts = 34.2
NOTA BENE: refg, mmx = 0.050000 7680
Eigenvalues calculated without the kinetic term contribution
Orthog. with lagrange multipliers : eps = 0.10E-08, max = 300
verlet algorithm for electron dynamics
with friction frice = 0.2000 , grease = 1.0000
Electron dynamics : the temperature is not controlled
initial random displacement of el. coordinates with amplitude= 0.020000
Electronic states
-----------------
Number of Electrons= 8, of States = 4
Occupation numbers :
2.00 2.00 2.00 2.00
Exchange and correlations functionals
-------------------------------------
Exchange-correlation = SLA LYP B88 BLYP ( 1 3 1 3 0 0)
Ions Simulation Parameters
--------------------------
Ions are not allowed to move
Ionic position (from input)
sorted by specie, and converted to real a.u. coordinates
Species 1 atoms = 1 mass = 29166.22 (a.u.), 16.00 (amu) rcmax = 0.80 (a.u.)
0.009900 0.009900 0.000000
Species 2 atoms = 2 mass = 1822.89 (a.u.), 1.00 (amu) rcmax = 0.80 (a.u.)
1.832500 -0.224300 -0.000100
-0.224300 1.832500 0.000200
Ionic position read from input file
Cell Dynamics Parameters (from STDIN)
-------------------------------------
internal stress tensor calculated
Starting cell generated from CELLDM
Constant VOLUME Molecular dynamics
cell parameters are not allowed to move
Verbosity: iverbosity = 1
Simulation dimensions initialization
------------------------------------
unit vectors of full simulation cell
in real space: in reciprocal space (units 2pi/alat):
1 12.0000 0.0000 0.0000 1.0000 0.0000 0.0000
2 0.0000 12.0000 0.0000 0.0000 1.0000 0.0000
3 0.0000 0.0000 12.0000 0.0000 0.0000 1.0000
G-vector sticks info
--------------------
sticks: dense smooth PW G-vecs: dense smooth PW
Sum 3673 3673 917 167037 167037 20815
Real Mesh
---------
Global Dimensions Local Dimensions Processor Grid
.X. .Y. .Z. .X. .Y. .Z. .X. .Y. .Z.
72 72 72 72 72 72 1 1 1
Array leading dimensions ( nr1x, nr2x, nr3x ) = 72 72 72
Local number of cell to store the grid ( nrxx ) = 373248
Number of x-y planes for each processors:
nr3l = 72
Smooth Real Mesh
----------------
Global Dimensions Local Dimensions Processor Grid
.X. .Y. .Z. .X. .Y. .Z. .X. .Y. .Z.
72 72 72 72 72 72 1 1 1
Array leading dimensions ( nr1x, nr2x, nr3x ) = 72 72 72
Local number of cell to store the grid ( nrxx ) = 373248
Number of x-y planes for each processors:
nr3sl = 72
Reciprocal Space Mesh
---------------------
Large Mesh
Global(ngm_g) MinLocal MaxLocal Average
83519 83519 83519 83519.00
Smooth Mesh
Global(ngms_g) MinLocal MaxLocal Average
83519 83519 83519 83519.00
Wave function Mesh
Global(ngw_g) MinLocal MaxLocal Average
10408 10408 10408 10408.00
System geometry initialization
------------------------------
ibrav = 14 cell parameters read from input file
Pseudopotentials initialization
-------------------------------
Common initialization
Specie: 1
1 indv= 1 ang. mom= 0
dion
0.2253
Specie: 2
dion
Cell parameters from input file are used in electron mass preconditioning
init_tpiba2= 0.27415568
Short Legend and Physical Units in the Output
---------------------------------------------
NFI [int] - step index
EKINC [HARTREE A.U.] - kinetic energy of the fictitious electronic dynamics
TEMPH [K] - Temperature of the fictitious cell dynamics
TEMP [K] - Ionic temperature
ETOT [HARTREE A.U.] - Scf total energy (Kohn-Sham hamiltonian)
ENTHAL [HARTREE A.U.] - Enthalpy ( ETOT + P * V )
ECONS [HARTREE A.U.] - Enthalpy + kinetic energy of ions and cell
ECONT [HARTREE A.U.] - Constant of motion for the CP lagrangian
Wave Initialization: random initial wave-functions
Occupation number from init
nbnd = 4
2.00 2.00 2.00 2.00
formf: eself= 18.94976
formf: vps(g=0)= -0.0063239 rhops(g=0)= -0.0034722
formf: sum_g vps(g)= -4.3546661 sum_g rhops(g)= -1.0540044
formf: vps(g=0)= -0.0011896 rhops(g=0)= -0.0005787
formf: sum_g vps(g)= -2.5239226 sum_g rhops(g)= -0.1756674
Delta V(G=0): 0.009308Ry, 0.253295eV
from rhoofr: total integrated electronic density
in g-space = 8.000000 in r-space = 8.000000
Total Electronic Pressure (GPa) 219.88160 0
nfi ekinc temph tempp etot enthal econs econt vnhh xnhh0 vnhp xnhp0
1 1.457425435063854 0.0 0.00 16.618453126572 16.618453126572 16.618453126572 18.075878561636 0.0000 0.0000 0.0000 0.0000
2 3.370307173125272 0.0 0.00 12.616967272523 12.616967272523 12.616967272523 15.987274445649 0.0000 0.0000 0.0000 0.0000
3 4.812597880280631 0.0 0.00 7.783981881073 7.783981881073 7.783981881073 12.596579761354 0.0000 0.0000 0.0000 0.0000
4 5.481155899215114 0.0 0.00 2.962174780806 2.962174780806 2.962174780806 8.443330680021 0.0000 0.0000 0.0000 0.0000
5 5.492390463061724 0.0 0.00 -1.451436023650 -1.451436023650 -1.451436023650 4.040954439412 0.0000 0.0000 0.0000 0.0000
6 4.837525119474037 0.0 0.00 -4.983221247981 -4.983221247981 -4.983221247981 -0.145696128507 0.0000 0.0000 0.0000 0.0000
7 3.533922760284271 0.0 0.00 -6.982239006264 -6.982239006264 -6.982239006264 -3.448316245980 0.0000 0.0000 0.0000 0.0000
8 2.152185290678938 0.0 0.00 -7.727941817933 -7.727941817933 -7.727941817933 -5.575756527254 0.0000 0.0000 0.0000 0.0000
9 1.322636756394577 0.0 0.00 -8.204426454790 -8.204426454790 -8.204426454790 -6.881789698395 0.0000 0.0000 0.0000 0.0000
10 1.043932818844121 0.0 0.00 -8.868266969223 -8.868266969223 -8.868266969223 -7.824334150379 0.0000 0.0000 0.0000 0.0000
11 0.975928549671647 0.0 0.00 -9.627119821571 -9.627119821571 -9.627119821571 -8.651191271899 0.0000 0.0000 0.0000 0.0000
12 0.897820715119057 0.0 0.00 -10.304559492907 -10.304559492907 -10.304559492907 -9.406738777788 0.0000 0.0000 0.0000 0.0000
13 0.784125470640432 0.0 0.00 -10.856441892215 -10.856441892215 -10.856441892215 -10.072316421575 0.0000 0.0000 0.0000 0.0000
14 0.682629248060577 0.0 0.00 -11.332499813295 -11.332499813295 -11.332499813295 -10.649870565235 0.0000 0.0000 0.0000 0.0000
15 0.619863956292710 0.0 0.00 -11.785052817589 -11.785052817589 -11.785052817589 -11.165188861296 0.0000 0.0000 0.0000 0.0000
16 0.590214198444808 0.0 0.00 -12.236816869207 -12.236816869207 -12.236816869207 -11.646602670762 0.0000 0.0000 0.0000 0.0000
17 0.577932983790171 0.0 0.00 -12.690563761000 -12.690563761000 -12.690563761000 -12.112630777210 0.0000 0.0000 0.0000 0.0000
18 0.571400131178193 0.0 0.00 -13.142949151697 -13.142949151697 -13.142949151697 -12.571549020519 0.0000 0.0000 0.0000 0.0000
19 0.565079704925154 0.0 0.00 -13.590592143684 -13.590592143684 -13.590592143684 -13.025512438759 0.0000 0.0000 0.0000 0.0000
20 0.556575452967903 0.0 0.00 -14.030469318938 -14.030469318938 -14.030469318938 -13.473893865970 0.0000 0.0000 0.0000 0.0000
21 0.543811759046179 0.0 0.00 -14.458123140467 -14.458123140467 -14.458123140467 -13.914311381421 0.0000 0.0000 0.0000 0.0000
22 0.524110110792198 0.0 0.00 -14.866342593282 -14.866342593282 -14.866342593282 -14.342232482490 0.0000 0.0000 0.0000 0.0000
23 0.495086783293616 0.0 0.00 -15.245901869612 -15.245901869612 -15.245901869612 -14.750815086319 0.0000 0.0000 0.0000 0.0000
24 0.456096564945653 0.0 0.00 -15.588023010079 -15.588023010079 -15.588023010079 -15.131926445134 0.0000 0.0000 0.0000 0.0000
25 0.408856561381465 0.0 0.00 -15.886868949285 -15.886868949285 -15.886868949285 -15.478012387903 0.0000 0.0000 0.0000 0.0000
26 0.356849074936923 0.0 0.00 -16.140689557439 -16.140689557439 -16.140689557439 -15.783840482502 0.0000 0.0000 0.0000 0.0000
27 0.304069448881144 0.0 0.00 -16.351408133077 -16.351408133077 -16.351408133077 -16.047338684196 0.0000 0.0000 0.0000 0.0000
28 0.253909525193034 0.0 0.00 -16.523357710539 -16.523357710539 -16.523357710539 -16.269448185346 0.0000 0.0000 0.0000 0.0000
29 0.208608629192592 0.0 0.00 -16.661940546923 -16.661940546923 -16.661940546923 -16.453331917731 0.0000 0.0000 0.0000 0.0000
30 0.169244034355797 0.0 0.00 -16.772664070316 -16.772664070316 -16.772664070316 -16.603420035960 0.0000 0.0000 0.0000 0.0000
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33 0.086048331893458 0.0 0.00 -16.984828380359 -16.984828380359 -16.984828380359 -16.898780048465 0.0000 0.0000 0.0000 0.0000
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87 0.000003649193347 0.0 0.00 -17.178403775371 -17.178403775371 -17.178403775371 -17.178400126178 0.0000 0.0000 0.0000 0.0000
88 0.000003140456696 0.0 0.00 -17.178405946382 -17.178405946382 -17.178405946382 -17.178402805925 0.0000 0.0000 0.0000 0.0000
89 0.000002703057991 0.0 0.00 -17.178407801604 -17.178407801604 -17.178407801604 -17.178405098546 0.0000 0.0000 0.0000 0.0000
90 0.000002326958166 0.0 0.00 -17.178409380871 -17.178409380871 -17.178409380871 -17.178407053913 0.0000 0.0000 0.0000 0.0000
91 0.000002003548305 0.0 0.00 -17.178410747020 -17.178410747020 -17.178410747020 -17.178408743472 0.0000 0.0000 0.0000 0.0000
92 0.000001725339280 0.0 0.00 -17.178411935208 -17.178411935208 -17.178411935208 -17.178410209869 0.0000 0.0000 0.0000 0.0000
93 0.000001485907886 0.0 0.00 -17.178412955886 -17.178412955886 -17.178412955886 -17.178411469978 0.0000 0.0000 0.0000 0.0000
94 0.000001279852333 0.0 0.00 -17.178413829462 -17.178413829462 -17.178413829462 -17.178412549610 0.0000 0.0000 0.0000 0.0000
95 0.000001102521713 0.0 0.00 -17.178414569300 -17.178414569300 -17.178414569300 -17.178413466779 0.0000 0.0000 0.0000 0.0000
96 0.000000949870275 0.0 0.00 -17.178415205940 -17.178415205940 -17.178415205940 -17.178414256069 0.0000 0.0000 0.0000 0.0000
97 0.000000818434324 0.0 0.00 -17.178415743563 -17.178415743563 -17.178415743563 -17.178414925128 0.0000 0.0000 0.0000 0.0000
98 0.000000705247533 0.0 0.00 -17.178416220984 -17.178416220984 -17.178416220984 -17.178415515736 0.0000 0.0000 0.0000 0.0000
99 0.000000607766141 0.0 0.00 -17.178416624940 -17.178416624940 -17.178416624940 -17.178416017174 0.0000 0.0000 0.0000 0.0000
* Physical Quantities at step: 100
Pressure of Nuclei (GPa) 0.00000 100
Pressure Total (GPa) -0.16985 100
total energy = -17.17841699222 Hartree a.u.
kinetic energy = 12.58528 Hartree a.u.
electrostatic energy = -18.19051 Hartree a.u.
esr = 0.14128 Hartree a.u.
eself = 18.94976 Hartree a.u.
pseudopotential energy = -9.32929 Hartree a.u.
n-l pseudopotential energy = 1.95843 Hartree a.u.
exchange-correlation energy = -4.20234 Hartree a.u.
average potential = 0.00000 Hartree a.u.
Eigenvalues (eV), kp = 1 , spin = 1
-24.73 -12.71 -8.94 -6.91
Allocated memory (kb) = 79996
CELL_PARAMETERS
12.00000000 0.00000000 0.00000000
0.00000000 12.00000000 0.00000000
0.00000000 0.00000000 12.00000000
System Density [g/cm^3] : 0.1167302083
System Volume [A.U.^3] : 1728.0000000000
Center of mass square displacement (a.u.): 0.000000
Total stress (GPa)
-0.21050590 0.02998249 -0.00360888
0.02998249 -0.21060144 -0.00234022
-0.00360888 -0.00234022 -0.08844616
ATOMIC_POSITIONS
O 0.99000000000000E-02 0.99000000000000E-02 0.00000000000000E+00
H 0.18325000000000E+01 -0.22430000000000E+00 -0.10000000000000E-03
H -0.22430000000000E+00 0.18325000000000E+01 0.20000000000000E-03
ATOMIC_VELOCITIES
O 0.00000000000000E+00 0.00000000000000E+00 0.00000000000000E+00
H 0.00000000000000E+00 0.00000000000000E+00 0.00000000000000E+00
H 0.00000000000000E+00 0.00000000000000E+00 0.00000000000000E+00
Forces acting on atoms (au):
O 0.23587276092010E-02 0.23508516785917E-02 0.27076970783783E-03
H -0.24259087468036E-02 0.60518133269686E-03 0.16277112387585E-03
H 0.60766904810162E-03 -0.24164259599375E-02 0.10009007393384E-03
Partial temperatures (for each ionic specie)
Species Temp (K) Mean Square Displacement (a.u.)
1 0.00E+00 0.0000E+00
2 0.00E+00 0.0000E+00
100 0.000000523785580 0.0 0.00 -17.178416992216 -17.178416992216 -17.178416992216 -17.178416468431 0.0000 0.0000 0.0000 0.0000
writing restart file: /home/fs395/scratch/QE/espresso/test-suite/..//tempdir/h2o_51.save
restart file written in 0.116 sec.
Averaged Physical Quantities
accumulated this run
ekinc : 0.44687 0.44687 (AU)
ekin : 11.30009 11.30009 (AU)
epot : -28.24112 -28.24112 (AU)
total energy : -14.77337 -14.77337 (AU)
temperature : 0.00000 0.00000 (K )
enthalpy : -14.77337 -14.77337 (AU)
econs : -14.77337 -14.77337 (AU)
pressure : 7.21895 7.21895 (Gpa)
volume : 1728.00000 1728.00000 (AU)
Called by MAIN_LOOP:
initialize : 0.95s CPU 0.44s WALL ( 1 calls)
main_loop : 43.79s CPU 23.93s WALL ( 100 calls)
cpr_total : 43.83s CPU 24.14s WALL ( 1 calls)
Called by INIT_RUN:
Called by CPR:
cpr_md : 43.83s CPU 24.14s WALL ( 100 calls)
move_electro : 42.69s CPU 23.59s WALL ( 100 calls)
Called by move_electrons:
rhoofr : 6.38s CPU 3.99s WALL ( 101 calls)
vofrho : 32.05s CPU 16.94s WALL ( 101 calls)
dforce : 4.23s CPU 2.79s WALL ( 202 calls)
calphi : 0.05s CPU 0.01s WALL ( 101 calls)
nlfl : 0.00s CPU 0.00s WALL ( 101 calls)
Called by ortho:
ortho_iter : 0.02s CPU 0.01s WALL ( 101 calls)
rsg : 0.00s CPU 0.00s WALL ( 101 calls)
rhoset : 0.14s CPU 0.03s WALL ( 101 calls)
sigset : 0.13s CPU 0.03s WALL ( 101 calls)
tauset : 0.13s CPU 0.03s WALL ( 101 calls)
ortho : 0.43s CPU 0.11s WALL ( 101 calls)
updatc : 0.09s CPU 0.02s WALL ( 101 calls)
Small boxes:
Low-level routines:
prefor : 0.02s CPU 0.00s WALL ( 101 calls)
nlfq : 0.16s CPU 0.04s WALL ( 101 calls)
nlsm1 : 0.04s CPU 0.01s WALL ( 102 calls)
nlsm2 : 0.15s CPU 0.04s WALL ( 101 calls)
fft : 9.34s CPU 7.21s WALL ( 808 calls)
ffts : 2.68s CPU 1.82s WALL ( 202 calls)
fftw : 4.42s CPU 3.39s WALL ( 606 calls)
betagx : 0.16s CPU 0.04s WALL ( 1 calls)
qradx : 0.00s CPU 0.00s WALL ( 1 calls)
gram : 0.00s CPU 0.00s WALL ( 1 calls)
nlinit : 0.40s CPU 0.10s WALL ( 1 calls)
init_dim : 0.04s CPU 0.04s WALL ( 1 calls)
newnlinit : 0.01s CPU 0.00s WALL ( 1 calls)
from_scratch : 0.51s CPU 0.29s WALL ( 1 calls)
strucf : 0.00s CPU 0.00s WALL ( 1 calls)
calbec : 0.04s CPU 0.01s WALL ( 102 calls)
CP : 44.78s CPU 24.60s WALL
This run was terminated on: 23:31:54 2Mar2017
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JOB DONE.
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