quantum-espresso/test-suite/cp_h2o/benchmark.out.git.inp=h2o-m...

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Program CP v.6.1 (svn rev. 13369) starts on 2Mar2017 at 23:32: 2
This program is part of the open-source Quantum ESPRESSO suite
for quantum simulation of materials; please cite
"P. Giannozzi et al., J. Phys.:Condens. Matter 21 395502 (2009);
URL http://www.quantum-espresso.org",
in publications or presentations arising from this work. More details at
http://www.quantum-espresso.org/quote
Serial multi-threaded version, running on 4 processor cores
Dumping input parameters
Reading input from h2o-mt-blyp-3.in
Job Title: Water Molecule
Atomic Pseudopotentials Parameters
----------------------------------
Reading pseudopotential for specie # 1 from file :
/home/fs395/scratch/QE/espresso/test-suite/..//pseudo/O.blyp-mt.UPF
file type is UPF v.1
Reading pseudopotential for specie # 2 from file :
/home/fs395/scratch/QE/espresso/test-suite/..//pseudo/H.blyp-vbc.UPF
file type is UPF v.1
Main Simulation Parameters (from input)
---------------------------------------
Restart Mode = 1 restart
Number of MD Steps = 200
Print out every 100 MD Steps
Reads from unit = 51
Writes to unit = 51
MD Simulation time step = 5.00
Electronic fictitious mass (emass) = 400.00
emass cut-off = 2.50
Simulation Cell Parameters (from input)
external pressure = 0.00 [KBar]
wmass (calculated) = 2493.41 [AU]
ibrav = 14
alat = 12.00000000
a1 = 12.00000000 0.00000000 0.00000000
a2 = 0.00000000 12.00000000 0.00000000
a3 = 0.00000000 0.00000000 12.00000000
b1 = 0.08333333 0.00000000 0.00000000
b2 = 0.00000000 0.08333333 0.00000000
b3 = 0.00000000 0.00000000 0.08333333
omega = 1728.00000000
Energy Cut-offs
---------------
Ecutwfc = 80.0 Ry, Ecutrho = 320.0 Ry, Ecuts = 320.0 Ry
Gcutwfc = 17.1 , Gcutrho = 34.2 Gcuts = 34.2
NOTA BENE: refg, mmx = 0.050000 7680
Eigenvalues calculated without the kinetic term contribution
Orthog. with lagrange multipliers : eps = 0.10E-08, max = 300
Electron dynamics with newton equations
Electron dynamics : the temperature is not controlled
Electronic states
-----------------
Number of Electrons= 8, of States = 4
Occupation numbers :
2.00 2.00 2.00 2.00
Exchange and correlations functionals
-------------------------------------
Exchange-correlation = SLA LYP B88 BLYP ( 1 3 1 3 0 0)
Ions Simulation Parameters
--------------------------
Ions are allowed to move
Ions dynamics with newton equations
the temperature is computed for 6 degrees of freedom
ion dynamics with fricp = 0.0000 and greasp = 1.0000
Zero initial momentum for ions
Ionic position (from input)
sorted by specie, and converted to real a.u. coordinates
Species 1 atoms = 1 mass = 29166.22 (a.u.), 16.00 (amu) rcmax = 0.80 (a.u.)
0.009900 0.009900 0.000000
Species 2 atoms = 2 mass = 1822.89 (a.u.), 1.00 (amu) rcmax = 0.80 (a.u.)
1.832500 -0.224300 -0.000100
-0.224300 1.832500 0.000200
Ionic position will be re-read from restart file
NOT all atoms are allowed to move
indx ..x.. ..y.. ..z..
1 F F F
Ionic temperature is not controlled
Cell Dynamics Parameters (from STDIN)
-------------------------------------
internal stress tensor calculated
Starting cell generated from CELLDM
Cell parameters will be re-read from restart file
Constant VOLUME Molecular dynamics
cell parameters are not allowed to move
Verbosity: iverbosity = 1
Simulation dimensions initialization
------------------------------------
unit vectors of full simulation cell
in real space: in reciprocal space (units 2pi/alat):
1 12.0000 0.0000 0.0000 1.0000 0.0000 0.0000
2 0.0000 12.0000 0.0000 0.0000 1.0000 0.0000
3 0.0000 0.0000 12.0000 0.0000 0.0000 1.0000
G-vector sticks info
--------------------
sticks: dense smooth PW G-vecs: dense smooth PW
Sum 3673 3673 917 167037 167037 20815
Real Mesh
---------
Global Dimensions Local Dimensions Processor Grid
.X. .Y. .Z. .X. .Y. .Z. .X. .Y. .Z.
72 72 72 72 72 72 1 1 1
Array leading dimensions ( nr1x, nr2x, nr3x ) = 72 72 72
Local number of cell to store the grid ( nrxx ) = 373248
Number of x-y planes for each processors:
nr3l = 72
Smooth Real Mesh
----------------
Global Dimensions Local Dimensions Processor Grid
.X. .Y. .Z. .X. .Y. .Z. .X. .Y. .Z.
72 72 72 72 72 72 1 1 1
Array leading dimensions ( nr1x, nr2x, nr3x ) = 72 72 72
Local number of cell to store the grid ( nrxx ) = 373248
Number of x-y planes for each processors:
nr3sl = 72
Reciprocal Space Mesh
---------------------
Large Mesh
Global(ngm_g) MinLocal MaxLocal Average
83519 83519 83519 83519.00
Smooth Mesh
Global(ngms_g) MinLocal MaxLocal Average
83519 83519 83519 83519.00
Wave function Mesh
Global(ngw_g) MinLocal MaxLocal Average
10408 10408 10408 10408.00
System geometry initialization
------------------------------
cell parameters read from restart file
ibrav = 14 cell parameters
cell at current step : h(t)
12.00000 0.00000 0.00000
0.00000 12.00000 0.00000
0.00000 0.00000 12.00000
cell at previous step : h(t-dt)
12.00000 0.00000 0.00000
0.00000 12.00000 0.00000
0.00000 0.00000 12.00000
Pseudopotentials initialization
-------------------------------
Common initialization
Specie: 1
1 indv= 1 ang. mom= 0
dion
0.2253
Specie: 2
dion
Cell parameters from input file are used in electron mass preconditioning
init_tpiba2= 0.27415568
Short Legend and Physical Units in the Output
---------------------------------------------
NFI [int] - step index
EKINC [HARTREE A.U.] - kinetic energy of the fictitious electronic dynamics
TEMPH [K] - Temperature of the fictitious cell dynamics
TEMP [K] - Ionic temperature
ETOT [HARTREE A.U.] - Scf total energy (Kohn-Sham hamiltonian)
ENTHAL [HARTREE A.U.] - Enthalpy ( ETOT + P * V )
ECONS [HARTREE A.U.] - Enthalpy + kinetic energy of ions and cell
ECONT [HARTREE A.U.] - Constant of motion for the CP lagrangian
reading restart file: /home/fs395/scratch/QE/espresso/test-suite/..//tempdir/h2o_51.save
restart file read in 0.022 sec.
Ionic velocities set to zero
formf: eself= 18.94976
formf: vps(g=0)= -0.0063239 rhops(g=0)= -0.0034722
formf: sum_g vps(g)= -4.3546661 sum_g rhops(g)= -1.0540044
formf: vps(g=0)= -0.0011896 rhops(g=0)= -0.0005787
formf: sum_g vps(g)= -2.5239226 sum_g rhops(g)= -0.1756674
Delta V(G=0): 0.009308Ry, 0.253295eV
WARNING setting to ZERO ions, electrons and cell velocities without
setting to ZERO all velocities could generate meaningles trajectories
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writing restart file: /home/fs395/scratch/QE/espresso/test-suite/..//tempdir/h2o_51.save
restart file written in 0.052 sec.
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writing restart file: /home/fs395/scratch/QE/espresso/test-suite/..//tempdir/h2o_51.save
restart file written in 0.043 sec.
301 0.000031642022344 0.0 16.14 -17.177577996638 -17.177577996638 -17.177421546242 -17.177389904220 0.0000 0.0000 0.0000 0.0000
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* Physical Quantities at step: 330
Pressure of Nuclei (GPa) 0.00238 330
Pressure Total (GPa) -0.40672 330
total energy = -17.17764715677 Hartree a.u.
kinetic energy = 12.54212 Hartree a.u.
electrostatic energy = -18.19786 Hartree a.u.
esr = 0.12975 Hartree a.u.
eself = 18.94976 Hartree a.u.
pseudopotential energy = -9.28941 Hartree a.u.
n-l pseudopotential energy = 1.95857 Hartree a.u.
exchange-correlation energy = -4.19107 Hartree a.u.
average potential = 0.00000 Hartree a.u.
Eigenvalues (eV), kp = 1 , spin = 1
-24.57 -12.70 -8.81 -6.89
Allocated memory (kb) = 79992
CELL_PARAMETERS
12.00000000 0.00000000 0.00000000
0.00000000 12.00000000 0.00000000
0.00000000 0.00000000 12.00000000
System Density [g/cm^3] : 0.1167302083
System Volume [A.U.^3] : 1728.0000000000
Center of mass square displacement (a.u.): 0.000052
Total stress (GPa)
-0.80155335 0.28792143 -0.04331151
0.28792143 -0.31289164 0.02156568
-0.04331151 0.02156568 -0.10572447
ATOMIC_POSITIONS
O 0.99000000000000E-02 0.99000000000000E-02 0.00000000000000E+00
H 0.18556423574242E+01 -0.33573714001624E+00 0.11140542880166E+00
H -0.19283910631384E+00 0.18373361502353E+01 -0.60755563543959E-01
ATOMIC_VELOCITIES
O 0.00000000000000E+00 0.00000000000000E+00 0.00000000000000E+00
H 0.44873078864450E-03 -0.27300071548761E-04 0.37699003368095E-04
H 0.23940782297024E-04 0.16110857695775E-03 -0.12687186252634E-04
Forces acting on atoms (au):
O 0.11696227100949E-01 -0.43591210194984E-02 0.74002137860700E-03
H -0.18222410315244E-01 0.75282833925178E-02 -0.11203914813861E-02
H 0.41562489089440E-02 -0.34975921070212E-02 0.22446530233900E-03
Partial temperatures (for each ionic specie)
Species Temp (K) Mean Square Displacement (a.u.)
1 2.29E+00 5.2162E-05
2 1.97E+01 1.4171E-02
330 0.000043991056833 0.0 20.80 -17.177647156769 -17.177647156769 -17.177437327787 -17.177393336730 0.0000 0.0000 0.0000 0.0000
writing restart file: /home/fs395/scratch/QE/espresso/test-suite/..//tempdir/h2o_51.save
restart file written in 0.045 sec.
Averaged Physical Quantities
accumulated this run
ekinc : 0.13553 0.00008 (AU)
ekin : 12.21063 12.59687 (AU)
epot : -30.68033 -31.73233 (AU)
total energy : -16.44908 -17.17792 (AU)
temperature : 26.97680 44.51172 (K )
enthalpy : -16.44908 -17.17792 (AU)
econs : -16.44881 -17.17748 (AU)
pressure : 2.14677 -0.10477 (Gpa)
volume : 1728.00000 1728.00000 (AU)
Called by MAIN_LOOP:
initialize : 0.49s CPU 0.21s WALL ( 1 calls)
main_loop : 85.65s CPU 47.45s WALL ( 200 calls)
cpr_total : 85.76s CPU 47.76s WALL ( 1 calls)
Called by INIT_RUN:
init_readfil : 0.05s CPU 0.05s WALL ( 1 calls)
Called by CPR:
cpr_md : 85.76s CPU 47.76s WALL ( 200 calls)
move_electro : 82.70s CPU 46.64s WALL ( 200 calls)
Called by move_electrons:
rhoofr : 13.31s CPU 7.84s WALL ( 200 calls)
vofrho : 60.00s CPU 32.91s WALL ( 200 calls)
dforce : 8.41s CPU 5.64s WALL ( 400 calls)
calphi : 0.11s CPU 0.03s WALL ( 200 calls)
nlfl : 0.00s CPU 0.00s WALL ( 200 calls)
Called by ortho:
ortho_iter : 0.03s CPU 0.01s WALL ( 200 calls)
rsg : 0.01s CPU 0.00s WALL ( 200 calls)
rhoset : 0.27s CPU 0.07s WALL ( 200 calls)
sigset : 0.27s CPU 0.07s WALL ( 200 calls)
tauset : 0.26s CPU 0.07s WALL ( 200 calls)
ortho : 0.85s CPU 0.21s WALL ( 200 calls)
updatc : 0.18s CPU 0.04s WALL ( 200 calls)
Small boxes:
Low-level routines:
prefor : 0.05s CPU 0.01s WALL ( 401 calls)
nlfq : 0.31s CPU 0.08s WALL ( 200 calls)
nlsm1 : 0.09s CPU 0.02s WALL ( 201 calls)
nlsm2 : 0.30s CPU 0.08s WALL ( 200 calls)
fft : 18.41s CPU 14.20s WALL ( 1600 calls)
ffts : 5.30s CPU 3.61s WALL ( 400 calls)
fftw : 8.79s CPU 6.77s WALL ( 1200 calls)
betagx : 0.15s CPU 0.04s WALL ( 1 calls)
qradx : 0.00s CPU 0.00s WALL ( 1 calls)
nlinit : 0.40s CPU 0.10s WALL ( 1 calls)
init_dim : 0.04s CPU 0.04s WALL ( 1 calls)
newnlinit : 0.01s CPU 0.00s WALL ( 1 calls)
from_restart : 0.04s CPU 0.03s WALL ( 1 calls)
strucf : 0.36s CPU 0.10s WALL ( 201 calls)
calbec : 0.09s CPU 0.02s WALL ( 201 calls)
CP : 1m26.26s CPU 0m47.98s WALL
This run was terminated on: 23:32:50 2Mar2017
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JOB DONE.
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