quantum-espresso/test-suite/cp_h2o/benchmark.out.git.inp=h2o-m...

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Program CP v.6.1 (svn rev. 13369) starts on 2Mar2017 at 23:32:50
This program is part of the open-source Quantum ESPRESSO suite
for quantum simulation of materials; please cite
"P. Giannozzi et al., J. Phys.:Condens. Matter 21 395502 (2009);
URL http://www.quantum-espresso.org",
in publications or presentations arising from this work. More details at
http://www.quantum-espresso.org/quote
Serial multi-threaded version, running on 4 processor cores
Dumping input parameters
Reading input from h2o-mt-blyp-4.in
Job Title: Water Molecule
Atomic Pseudopotentials Parameters
----------------------------------
Reading pseudopotential for specie # 1 from file :
/home/fs395/scratch/QE/espresso/test-suite/..//pseudo/O.blyp-mt.UPF
file type is UPF v.1
Reading pseudopotential for specie # 2 from file :
/home/fs395/scratch/QE/espresso/test-suite/..//pseudo/H.blyp-vbc.UPF
file type is UPF v.1
Main Simulation Parameters (from input)
---------------------------------------
Restart Mode = 1 restart
Number of MD Steps = 200
Print out every 100 MD Steps
Reads from unit = 51
Writes to unit = 51
MD Simulation time step = 5.00
Electronic fictitious mass (emass) = 400.00
emass cut-off = 2.50
Simulation Cell Parameters (from input)
external pressure = 0.00 [KBar]
wmass (calculated) = 2493.41 [AU]
ibrav = 14
alat = 12.00000000
a1 = 12.00000000 0.00000000 0.00000000
a2 = 0.00000000 12.00000000 0.00000000
a3 = 0.00000000 0.00000000 12.00000000
b1 = 0.08333333 0.00000000 0.00000000
b2 = 0.00000000 0.08333333 0.00000000
b3 = 0.00000000 0.00000000 0.08333333
omega = 1728.00000000
Energy Cut-offs
---------------
Ecutwfc = 80.0 Ry, Ecutrho = 320.0 Ry, Ecuts = 320.0 Ry
Gcutwfc = 17.1 , Gcutrho = 34.2 Gcuts = 34.2
NOTA BENE: refg, mmx = 0.050000 7680
Eigenvalues calculated without the kinetic term contribution
Orthog. with lagrange multipliers : eps = 0.10E-08, max = 300
Electron dynamics with newton equations
Electron dynamics : the temperature is not controlled
Electronic states
-----------------
Number of Electrons= 8, of States = 4
Occupation numbers :
2.00 2.00 2.00 2.00
Exchange and correlations functionals
-------------------------------------
Exchange-correlation = SLA LYP B88 BLYP ( 1 3 1 3 0 0)
Ions Simulation Parameters
--------------------------
Ions are allowed to move
Ions dynamics with newton equations
the temperature is computed for 6 degrees of freedom
ion dynamics with fricp = 0.0000 and greasp = 1.0000
Ionic position (from input)
sorted by specie, and converted to real a.u. coordinates
Species 1 atoms = 1 mass = 29166.22 (a.u.), 16.00 (amu) rcmax = 0.80 (a.u.)
0.009900 0.009900 0.000000
Species 2 atoms = 2 mass = 1822.89 (a.u.), 1.00 (amu) rcmax = 0.80 (a.u.)
1.832500 -0.224300 -0.000100
-0.224300 1.832500 0.000200
Ionic position will be re-read from restart file
NOT all atoms are allowed to move
indx ..x.. ..y.. ..z..
1 F F F
Ionic temperature is not controlled
Cell Dynamics Parameters (from STDIN)
-------------------------------------
internal stress tensor calculated
Starting cell generated from CELLDM
Cell parameters will be re-read from restart file
Constant VOLUME Molecular dynamics
cell parameters are not allowed to move
Verbosity: iverbosity = 1
Simulation dimensions initialization
------------------------------------
unit vectors of full simulation cell
in real space: in reciprocal space (units 2pi/alat):
1 12.0000 0.0000 0.0000 1.0000 0.0000 0.0000
2 0.0000 12.0000 0.0000 0.0000 1.0000 0.0000
3 0.0000 0.0000 12.0000 0.0000 0.0000 1.0000
G-vector sticks info
--------------------
sticks: dense smooth PW G-vecs: dense smooth PW
Sum 3673 3673 917 167037 167037 20815
Real Mesh
---------
Global Dimensions Local Dimensions Processor Grid
.X. .Y. .Z. .X. .Y. .Z. .X. .Y. .Z.
72 72 72 72 72 72 1 1 1
Array leading dimensions ( nr1x, nr2x, nr3x ) = 72 72 72
Local number of cell to store the grid ( nrxx ) = 373248
Number of x-y planes for each processors:
nr3l = 72
Smooth Real Mesh
----------------
Global Dimensions Local Dimensions Processor Grid
.X. .Y. .Z. .X. .Y. .Z. .X. .Y. .Z.
72 72 72 72 72 72 1 1 1
Array leading dimensions ( nr1x, nr2x, nr3x ) = 72 72 72
Local number of cell to store the grid ( nrxx ) = 373248
Number of x-y planes for each processors:
nr3sl = 72
Reciprocal Space Mesh
---------------------
Large Mesh
Global(ngm_g) MinLocal MaxLocal Average
83519 83519 83519 83519.00
Smooth Mesh
Global(ngms_g) MinLocal MaxLocal Average
83519 83519 83519 83519.00
Wave function Mesh
Global(ngw_g) MinLocal MaxLocal Average
10408 10408 10408 10408.00
System geometry initialization
------------------------------
cell parameters read from restart file
ibrav = 14 cell parameters
cell at current step : h(t)
12.00000 0.00000 0.00000
0.00000 12.00000 0.00000
0.00000 0.00000 12.00000
cell at previous step : h(t-dt)
12.00000 0.00000 0.00000
0.00000 12.00000 0.00000
0.00000 0.00000 12.00000
Pseudopotentials initialization
-------------------------------
Common initialization
Specie: 1
1 indv= 1 ang. mom= 0
dion
0.2253
Specie: 2
dion
Cell parameters from input file are used in electron mass preconditioning
init_tpiba2= 0.27415568
Short Legend and Physical Units in the Output
---------------------------------------------
NFI [int] - step index
EKINC [HARTREE A.U.] - kinetic energy of the fictitious electronic dynamics
TEMPH [K] - Temperature of the fictitious cell dynamics
TEMP [K] - Ionic temperature
ETOT [HARTREE A.U.] - Scf total energy (Kohn-Sham hamiltonian)
ENTHAL [HARTREE A.U.] - Enthalpy ( ETOT + P * V )
ECONS [HARTREE A.U.] - Enthalpy + kinetic energy of ions and cell
ECONT [HARTREE A.U.] - Constant of motion for the CP lagrangian
reading restart file: /home/fs395/scratch/QE/espresso/test-suite/..//tempdir/h2o_51.save
restart file read in 0.020 sec.
formf: eself= 18.94976
formf: vps(g=0)= -0.0063239 rhops(g=0)= -0.0034722
formf: sum_g vps(g)= -4.3546661 sum_g rhops(g)= -1.0540044
formf: vps(g=0)= -0.0011896 rhops(g=0)= -0.0005787
formf: sum_g vps(g)= -2.5239226 sum_g rhops(g)= -0.1756674
Delta V(G=0): 0.009308Ry, 0.253295eV
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writing restart file: /home/fs395/scratch/QE/espresso/test-suite/..//tempdir/h2o_51.save
restart file written in 0.044 sec.
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writing restart file: /home/fs395/scratch/QE/espresso/test-suite/..//tempdir/h2o_51.save
restart file written in 0.045 sec.
501 0.000012075050172 0.0 3.95 -17.177443219192 -17.177443219192 -17.177405652303 -17.177393577253 0.0000 0.0000 0.0000 0.0000
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523 0.000129921761034 0.0 78.64 -17.178293934908 -17.178293934908 -17.177523193853 -17.177393272092 0.0000 0.0000 0.0000 0.0000
524 0.000131364449609 0.0 80.02 -17.178307691472 -17.178307691472 -17.177524309015 -17.177392944565 0.0000 0.0000 0.0000 0.0000
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526 0.000133101969025 0.0 79.85 -17.178305292693 -17.178305292693 -17.177525356782 -17.177392254813 0.0000 0.0000 0.0000 0.0000
527 0.000133425596762 0.0 78.30 -17.178289126878 -17.178289126878 -17.177525307734 -17.177391882137 0.0000 0.0000 0.0000 0.0000
528 0.000133210031576 0.0 75.83 -17.178263536725 -17.178263536725 -17.177524787458 -17.177391577427 0.0000 0.0000 0.0000 0.0000
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* Physical Quantities at step: 530
Pressure of Nuclei (GPa) 0.00755 530
Pressure Total (GPa) 0.02974 530
total energy = -17.17818675640 Hartree a.u.
kinetic energy = 12.63450 Hartree a.u.
electrostatic energy = -18.18263 Hartree a.u.
esr = 0.15275 Hartree a.u.
eself = 18.94976 Hartree a.u.
pseudopotential energy = -9.36747 Hartree a.u.
n-l pseudopotential energy = 1.95008 Hartree a.u.
exchange-correlation energy = -4.21267 Hartree a.u.
average potential = 0.00000 Hartree a.u.
Eigenvalues (eV), kp = 1 , spin = 1
-24.81 -12.89 -8.86 -6.92
Allocated memory (kb) = 79996
CELL_PARAMETERS
12.00000000 0.00000000 0.00000000
0.00000000 12.00000000 0.00000000
0.00000000 0.00000000 12.00000000
System Density [g/cm^3] : 0.1167302083
System Volume [A.U.^3] : 1728.0000000000
Center of mass square displacement (a.u.): 0.000029
Total stress (GPa)
0.25060570 -0.01323320 0.02334124
-0.01323320 -0.09846351 -0.00004529
0.02334124 -0.00004529 -0.06292342
ATOMIC_POSITIONS
O 0.99000000000000E-02 0.99000000000000E-02 0.00000000000000E+00
H 0.17842621410760E+01 -0.29894612028265E+00 0.12759478286104E+00
H -0.19370943010456E+00 0.18261635020892E+01 -0.78381116951820E-01
ATOMIC_VELOCITIES
O 0.00000000000000E+00 0.00000000000000E+00 0.00000000000000E+00
H -0.72244138960254E-03 0.35686092262417E-03 -0.30025150800830E-04
H 0.21599236638393E-03 -0.18327652782794E-03 -0.40196866724632E-05
Forces acting on atoms (au):
O -0.13609601765615E-01 -0.12620247594717E-02 -0.97320014884374E-03
H 0.12238770455365E-01 0.75413917436720E-04 0.94343638535551E-03
H 0.18550742329787E-02 0.77242802467903E-03 -0.67765746990155E-04
Partial temperatures (for each ionic specie)
Species Temp (K) Mean Square Displacement (a.u.)
1 2.73E+00 2.8647E-05
2 6.72E+01 1.5191E-02
530 0.000129916206743 0.0 68.54 -17.178186756403 -17.178186756403 -17.177521008421 -17.177391092214 0.0000 0.0000 0.0000 0.0000
writing restart file: /home/fs395/scratch/QE/espresso/test-suite/..//tempdir/h2o_51.save
restart file written in 0.046 sec.
Averaged Physical Quantities
accumulated this run
ekinc : 0.08442 0.00008 (AU)
ekin : 12.35250 12.58657 (AU)
epot : -31.07384 -31.72314 (AU)
total energy : -16.72411 -17.17791 (AU)
temperature : 33.31911 43.78393 (K )
enthalpy : -16.72411 -17.17791 (AU)
econs : -16.72378 -17.17747 (AU)
pressure : 1.27935 -0.15188 (Gpa)
volume : 1728.00000 1728.00000 (AU)
Called by MAIN_LOOP:
initialize : 0.49s CPU 0.21s WALL ( 1 calls)
main_loop : 86.51s CPU 47.91s WALL ( 200 calls)
cpr_total : 86.61s CPU 48.22s WALL ( 1 calls)
Called by INIT_RUN:
init_readfil : 0.05s CPU 0.05s WALL ( 1 calls)
Called by CPR:
cpr_md : 86.61s CPU 48.22s WALL ( 200 calls)
move_electro : 83.52s CPU 47.09s WALL ( 200 calls)
Called by move_electrons:
rhoofr : 13.38s CPU 7.94s WALL ( 200 calls)
vofrho : 60.69s CPU 33.30s WALL ( 200 calls)
dforce : 8.42s CPU 5.59s WALL ( 400 calls)
calphi : 0.11s CPU 0.03s WALL ( 200 calls)
nlfl : 0.00s CPU 0.00s WALL ( 200 calls)
Called by ortho:
ortho_iter : 0.03s CPU 0.01s WALL ( 200 calls)
rsg : 0.00s CPU 0.00s WALL ( 200 calls)
rhoset : 0.28s CPU 0.07s WALL ( 200 calls)
sigset : 0.27s CPU 0.07s WALL ( 200 calls)
tauset : 0.27s CPU 0.07s WALL ( 200 calls)
ortho : 0.86s CPU 0.22s WALL ( 200 calls)
updatc : 0.18s CPU 0.04s WALL ( 200 calls)
Small boxes:
Low-level routines:
prefor : 0.05s CPU 0.01s WALL ( 401 calls)
nlfq : 0.32s CPU 0.08s WALL ( 200 calls)
nlsm1 : 0.09s CPU 0.02s WALL ( 201 calls)
nlsm2 : 0.31s CPU 0.08s WALL ( 200 calls)
fft : 18.54s CPU 14.29s WALL ( 1600 calls)
ffts : 5.32s CPU 3.61s WALL ( 400 calls)
fftw : 8.85s CPU 6.79s WALL ( 1200 calls)
betagx : 0.15s CPU 0.04s WALL ( 1 calls)
qradx : 0.00s CPU 0.00s WALL ( 1 calls)
nlinit : 0.39s CPU 0.10s WALL ( 1 calls)
init_dim : 0.04s CPU 0.04s WALL ( 1 calls)
newnlinit : 0.01s CPU 0.00s WALL ( 1 calls)
from_restart : 0.04s CPU 0.03s WALL ( 1 calls)
strucf : 0.36s CPU 0.10s WALL ( 201 calls)
calbec : 0.09s CPU 0.02s WALL ( 201 calls)
CP : 1m27.10s CPU 0m48.44s WALL
This run was terminated on: 23:33:38 2Mar2017
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JOB DONE.
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