quantum-espresso/test-suite/cp_o2/benchmark.out.git.inp=o2-us...

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RUNNING , /home/giannozz/q-e-pseudolib/test-suite/..//bin/cp.x -input o2-us-para-pbe-6.in
Program CP v.6.5 starts on 24Apr2020 at 20:26: 7
This program is part of the open-source Quantum ESPRESSO suite
for quantum simulation of materials; please cite
"P. Giannozzi et al., J. Phys.:Condens. Matter 21 395502 (2009);
"P. Giannozzi et al., J. Phys.:Condens. Matter 29 465901 (2017);
URL http://www.quantum-espresso.org",
in publications or presentations arising from this work. More details at
http://www.quantum-espresso.org/quote
Parallel version (MPI), running on 1 processors
MPI processes distributed on 1 nodes
Fft bands division: nmany = 1
Reading input from o2-us-para-pbe-6.in
Job Title: O2 Crystal
Atomic Pseudopotentials Parameters
----------------------------------
Reading pseudopotential for specie # 1 from file :
/home/giannozz/q-e-pseudolib/test-suite/..//pseudo/O.pbe-rrkjus.UPF
file type is UPF v.2
file O.pbe-rrkjus.UPF: wavefunction(s) 2S renormalized
Main Simulation Parameters (from input)
---------------------------------------
Restart Mode = 1 restart
Number of MD Steps = 100
Print out every 10 MD Steps
Reads from unit = 53
Writes to unit = 54
MD Simulation time step = 12.00
Electronic fictitious mass (emass) = 900.00
emass cut-off = 2.80
Simulation Cell Parameters (from input)
external pressure = 0.00 [KBar]
wmass (calculated) = 4432.73 [AU]
ibrav = 14
alat = 12.00000000
a1 = 12.00000000 0.00000000 0.00000000
a2 = 0.00000000 12.00000000 0.00000000
a3 = 0.00000000 0.00000000 12.00000000
b1 = 0.08333333 0.00000000 0.00000000
b2 = 0.00000000 0.08333333 0.00000000
b3 = 0.00000000 0.00000000 0.08333333
omega = 1728.00000000
Energy Cut-offs
---------------
Ecutwfc = 30.0 Ry, Ecutrho = 240.0 Ry, Ecuts = 120.0 Ry
Gcutwfc = 10.5 , Gcutrho = 29.6 Gcuts = 20.9
NOTA BENE: refg, mmx = 0.050000 5760
Eigenvalues calculated without the kinetic term contribution
Orthog. with lagrange multipliers : eps = 0.10E-08, max = 30
Electron dynamics with newton equations
Electron dynamics : the temperature is not controlled
Electronic states
-----------------
Local Spin Density calculation
Number of Electrons= 12
Spins up = 7, occupations:
1.00 1.00 1.00 1.00 1.00 1.00 1.00
Spins down = 5, occupations:
1.00 1.00 1.00 1.00 1.00
Exchange and correlations functionals
-------------------------------------
Exchange-correlation= SLA PW PBE PBE
( 1 4 3 4 0 0 0)
Ions Simulation Parameters
--------------------------
Ions are allowed to move
Ions dynamics with newton equations
the temperature is computed for 6 degrees of freedom
ion dynamics with fricp = 0.0000 and greasp = 1.0000
Ionic position (from input)
sorted by specie, and converted to real a.u. coordinates
Species 1 atoms = 2 mass = 29166.22 (a.u.), 16.00 (amu) rcmax = 1.00 (a.u.)
3.260309 2.287244 5.163090
3.260309 2.287244 7.479148
Ionic position will be re-read from restart file
All atoms are allowed to move
Ionic temperature is not controlled
Cell Dynamics Parameters (from STDIN)
-------------------------------------
internal stress tensor calculated
Starting cell generated from CELLDM
Cell parameters will be re-read from restart file
Constant VOLUME Molecular dynamics
cell parameters are not allowed to move
Verbosity: iverbosity = 1
Simulation dimensions initialization
------------------------------------
unit vectors of full simulation cell
in real space: in reciprocal space (units 2pi/alat):
1 12.0000 0.0000 0.0000 1.0000 0.0000 0.0000
2 0.0000 12.0000 0.0000 0.0000 1.0000 0.0000
3 0.0000 0.0000 12.0000 0.0000 0.0000 1.0000
G-vector sticks info
--------------------
sticks: dense smooth PW G-vecs: dense smooth PW
Sum 2749 1369 349 108671 38401 4801
Real Mesh
---------
Global Dimensions Local Dimensions Processor Grid
.X. .Y. .Z. .X. .Y. .Z. .X. .Y. .Z.
60 60 60 60 60 60 1 1 1
Array leading dimensions ( nr1x, nr2x, nr3x ) = 60 60 60
Local number of cell to store the grid ( nrxx ) = 216000
Number of x-y planes for each processors:
| 60, 60 |
Smooth Real Mesh
----------------
Global Dimensions Local Dimensions Processor Grid
.X. .Y. .Z. .X. .Y. .Z. .X. .Y. .Z.
45 45 45 45 45 45 1 1 1
Array leading dimensions ( nr1x, nr2x, nr3x ) = 45 45 45
Local number of cell to store the grid ( nrxx ) = 91125
Number of x-y planes for each processors:
| 45, 45 |
Small Box Real Mesh
-------------------
Global Dimensions Local Dimensions Processor Grid
.X. .Y. .Z. .X. .Y. .Z. .X. .Y. .Z.
24 24 24 24 24 24 1 1 1
Array leading dimensions ( nr1x, nr2x, nr3x ) = 24 24 24
Local number of cell to store the grid ( nrxx ) = 13824
unit vectors of box grid cell
in real space: in reciprocal space:
4.8000 0.0000 0.0000 1.0000 0.0000 0.0000
0.0000 4.8000 0.0000 0.0000 1.0000 0.0000
0.0000 0.0000 4.8000 0.0000 0.0000 1.0000
Reciprocal Space Mesh
---------------------
Large Mesh
Global(ngm_g) MinLocal MaxLocal Average
54336 54336 54336 54336.00
Smooth Mesh
Global(ngms_g) MinLocal MaxLocal Average
19201 19201 19201 19201.00
Wave function Mesh
Global(ngw_g) MinLocal MaxLocal Average
2401 2401 2401 2401.00
Small box Mesh
ngb = 3490 not distributed to processors
System geometry initialization
------------------------------
cell parameters read from restart file
ibrav = 14 cell parameters
cell at current step : h(t)
12.00000 0.00000 0.00000
0.00000 12.00000 0.00000
0.00000 0.00000 12.00000
cell at previous step : h(t-dt)
12.00000 0.00000 0.00000
0.00000 12.00000 0.00000
0.00000 0.00000 12.00000
unit vectors of box grid cell
in real space: in reciprocal space:
4.8000 0.0000 0.0000 1.0000 0.0000 0.0000
0.0000 4.8000 0.0000 0.0000 1.0000 0.0000
0.0000 0.0000 4.8000 0.0000 0.0000 1.0000
Matrix Multiplication Performances
ortho mmul, time for parallel driver = 0.00000 with 1 procs
Constraints matrixes will be distributed block like on
ortho sub-group = 1* 1 procs
Pseudopotentials initialization
-------------------------------
is, nh(is), ngb, kkbeta, lmaxq = 1 8 3490 865 3
qqq
-0.1022 0.5410 0.0000 0.0000
0.5410 -2.5883 0.0000 0.0000
0.0000 0.0000 0.2297 0.2861
0.0000 0.0000 0.2861 0.3565
Common initialization
Specie: 1
1 indv= 1 ang. mom= 0
2 indv= 2 ang. mom= 0
3 indv= 3 ang. mom= 1
4 indv= 3 ang. mom= 1
5 indv= 3 ang. mom= 1
6 indv= 4 ang. mom= 1
7 indv= 4 ang. mom= 1
8 indv= 4 ang. mom= 1
dion
0.4798 -1.3236 0.0000 0.0000
-1.3236 2.2757 0.0000 0.0000
0.0000 0.0000 0.6278 0.8512
0.0000 0.0000 0.8512 1.1500
Cell parameters from input file are used in electron mass preconditioning
init_tpiba2= 0.27415568
Short Legend and Physical Units in the Output
---------------------------------------------
NFI [int] - step index
EKINC [HARTREE A.U.] - kinetic energy of the fictitious electronic dynamics
TEMPH [K] - Temperature of the fictitious cell dynamics
TEMP [K] - Ionic temperature
ETOT [HARTREE A.U.] - Scf total energy (Kohn-Sham hamiltonian)
ENTHAL [HARTREE A.U.] - Enthalpy ( ETOT + P * V )
ECONS [HARTREE A.U.] - Enthalpy + kinetic energy of ions and cell
ECONT [HARTREE A.U.] - Constant of motion for the CP lagrangian
formf: eself= 28.72384
formf: vps(g=0)= -0.0087653 rhops(g=0)= -0.0034722
formf: vps(g=0)= -0.0084059 rhops(g=0)= -0.0032422
formf: vps(g=0)= -0.0084059 rhops(g=0)= -0.0032422
formf: vps(g=0)= -0.0084059 rhops(g=0)= -0.0032422
formf: vps(g=0)= -0.0080624 rhops(g=0)= -0.0030274
formf: sum_g vps(g)= -2.4887968 sum_g rhops(g)= -0.5404975
Delta V(G=0): 0.021817Ry, 0.593660eV
nfi ekinc temph tempp etot enthal econs econt vnhh xnhh0 vnhp xnhp0
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395 0.001147773564165 0.0 261.08 -31.715637618546 -31.715637618546 -31.713157273471 -31.712009499907 0.0000 0.0000 0.0000 0.0000
396 0.000856686082516 0.0 192.73 -31.714696809152 -31.714696809152 -31.712865758329 -31.712009072246 0.0000 0.0000 0.0000 0.0000
397 0.000630184863525 0.0 133.56 -31.713908482475 -31.713908482475 -31.712639633472 -31.712009448608 0.0000 0.0000 0.0000 0.0000
398 0.000459322382538 0.0 84.04 -31.713267176086 -31.713267176086 -31.712468806596 -31.712009484214 0.0000 0.0000 0.0000 0.0000
399 0.000332746155937 0.0 45.21 -31.712770960425 -31.712770960425 -31.712341401117 -31.712008654961 0.0000 0.0000 0.0000 0.0000
* Physical Quantities at step: 400
from rhoofr: total integrated electronic density
spin up
in g-space = 7.000000 in r-space = 7.000000
spin down
in g-space = 5.000000 in r-space = 5.000000
Total Electronic Pressure (GPa) -10.10010 400
Pressure of Nuclei (GPa) 0.00195 400
Pressure Total (GPa) -2.46183 400
Spin contamination: s(s+1)= 2.01 (Slater) 2.03 (Becke) 2.00 (expected)
total energy = -31.71242411228 Hartree a.u.
kinetic energy = 12.91930 Hartree a.u.
electrostatic energy = -28.57955 Hartree a.u.
esr = 0.07091 Hartree a.u.
eself = 28.72384 Hartree a.u.
pseudopotential energy = -16.22853 Hartree a.u.
n-l pseudopotential energy = 6.82580 Hartree a.u.
exchange-correlation energy = -6.64946 Hartree a.u.
average potential = 0.00000 Hartree a.u.
Eigenvalues (eV), kp = 1 , spin = 1
-28.82 -22.31 -12.70 -11.76 -11.76 -8.29 -8.29
Eigenvalues (eV), kp = 1 , spin = 2
-27.37 -20.40 -11.95 -9.78 -9.77
CELL_PARAMETERS
12.00000000 0.00000000 0.00000000
0.00000000 12.00000000 0.00000000
0.00000000 0.00000000 12.00000000
System Density [g/cm^3] : 0.2075203704
System Volume [A.U.^3] : 1728.0000000000
Center of mass square displacement (a.u.): 0.023884
Total stress (GPa)
-0.23471363 0.14827404 0.71805120
0.14827404 -0.41071077 -1.27626176
0.71805310 -1.27626510 -6.74007814
ATOMIC_POSITIONS
O 0.32656561250425E+01 0.20406570431607E+01 0.49033748020354E+01
O 0.29717927982455E+01 0.25565738579985E+01 0.76170624206810E+01
ATOMIC_VELOCITIES
O 0.20027047869908E-04 0.10408846435050E-05 -0.74386715990582E-04
O -0.20027047869908E-04 -0.10408846435328E-05 0.74386715990526E-04
Forces acting on atoms (au):
O -0.11923659464333E-01 0.20036501914124E-01 0.10778279459065E+00
O 0.10273580772700E-01 -0.20068377140079E-01 -0.10833678170181E+00
Partial temperatures (for each ionic specie)
Species Temp (K) Mean Square Displacement (a.u.)
1 1.82E+01 1.2766E-01
nfi ekinc temph tempp etot enthal econs econt vnhh xnhh0 vnhp xnhp0
400 0.000243573921269 0.0 18.22 -31.712424112279 -31.712424112279 -31.712250994758 -31.712007420837 0.0000 0.0000 0.0000 0.0000
writing restart file (with schema): ./o2_54.save/
restart : 0.00s CPU 0.01s WALL ( 1 calls)
401 0.000190545728729 0.0 3.77 -31.712232926179 -31.712232926179 -31.712197114739 -31.712006569011 0.0000 0.0000 0.0000 0.0000
402 0.000175601381077 0.0 1.88 -31.712199761787 -31.712199761787 -31.712181944616 -31.712006343235 0.0000 0.0000 0.0000 0.0000
403 0.000202313394824 0.0 11.92 -31.712321865519 -31.712321865519 -31.712208608053 -31.712006294658 0.0000 0.0000 0.0000 0.0000
404 0.000276332136137 0.0 33.00 -31.712595852916 -31.712595852916 -31.712282307262 -31.712005975126 0.0000 0.0000 0.0000 0.0000
405 0.000404815421802 0.0 64.40 -31.713022317439 -31.713022317439 -31.712410456219 -31.712005640797 0.0000 0.0000 0.0000 0.0000
406 0.000592159462970 0.0 105.97 -31.713605016006 -31.713605016006 -31.712598293924 -31.712006134461 0.0000 0.0000 0.0000 0.0000
407 0.000834139105579 0.0 158.22 -31.714345358122 -31.714345358122 -31.712842184726 -31.712008045620 0.0000 0.0000 0.0000 0.0000
408 0.001116193327915 0.0 222.21 -31.715238382300 -31.715238382300 -31.713127282076 -31.712011088748 0.0000 0.0000 0.0000 0.0000
409 0.001419312196097 0.0 299.05 -31.716274797023 -31.716274797023 -31.713433661557 -31.712014349361 0.0000 0.0000 0.0000 0.0000
* Physical Quantities at step: 410
Pressure of Nuclei (GPa) 0.04202 410
Pressure Total (GPa) -2.38460 410
Spin contamination: s(s+1)= 2.00 (Slater) 2.03 (Becke) 2.00 (expected)
total energy = -31.71744703818 Hartree a.u.
kinetic energy = 12.93663 Hartree a.u.
electrostatic energy = -28.57033 Hartree a.u.
esr = 0.07970 Hartree a.u.
eself = 28.72384 Hartree a.u.
pseudopotential energy = -16.25218 Hartree a.u.
n-l pseudopotential energy = 6.82591 Hartree a.u.
exchange-correlation energy = -6.65747 Hartree a.u.
average potential = 0.00000 Hartree a.u.
Eigenvalues (eV), kp = 1 , spin = 1
-29.04 -22.14 -12.76 -11.85 -11.85 -8.23 -8.22
Eigenvalues (eV), kp = 1 , spin = 2
-27.64 -20.32 -12.01 -9.88 -9.88
CELL_PARAMETERS
12.00000000 0.00000000 0.00000000
0.00000000 12.00000000 0.00000000
0.00000000 0.00000000 12.00000000
System Density [g/cm^3] : 0.2075203704
System Volume [A.U.^3] : 1728.0000000000
Center of mass square displacement (a.u.): 0.023884
Total stress (GPa)
-0.27661512 0.10742648 0.68346146
0.10742648 -0.40192303 -1.15695767
0.68346338 -1.15696100 -6.47525933
ATOMIC_POSITIONS
O 0.32653877503570E+01 0.20455961851041E+01 0.49198776614416E+01
O 0.29720611729310E+01 0.25516347160551E+01 0.76005595612748E+01
ATOMIC_VELOCITIES
O -0.24651348344895E-04 0.81661741369254E-04 0.34577828931659E-03
O 0.24651348344881E-04 -0.81661741369241E-04 -0.34577828931659E-03
Forces acting on atoms (au):
O -0.11327277269831E-01 0.20582968668069E-01 0.10559896676499E+00
O 0.11362148759483E-01 -0.20488780176755E-01 -0.10562613563609E+00
Partial temperatures (for each ionic specie)
Species Temp (K) Mean Square Displacement (a.u.)
1 3.89E+02 1.1877E-01
410 0.001730454196834 0.0 389.39 -31.717447038181 -31.717447038181 -31.713747625869 -31.712017171672 0.0000 0.0000 0.0000 0.0000
writing restart file (with schema): ./o2_54.save/
restart : 0.01s CPU 0.02s WALL ( 2 calls)
Averaged Physical Quantities
accumulated this run
ekinc : 0.16550 0.00617 (AU)
ekin : 13.16671 13.16514 (AU)
epot : -51.28608 -51.81419 (AU)
total energy : -31.28826 -31.73189 (AU)
temperature : 702.27518 1442.89587 (K )
enthalpy : -31.28826 -31.73189 (AU)
econs : -31.28158 -31.71819 (AU)
pressure : 0.72290 -0.26712 (Gpa)
volume : 1728.00000 1728.00000 (AU)
Called by MAIN_LOOP:
initialize : 1.29s CPU 1.33s WALL ( 1 calls)
main_loop : 27.86s CPU 29.87s WALL ( 100 calls)
cpr_total : 27.87s CPU 29.89s WALL ( 1 calls)
Called by INIT_RUN:
init_readfil : 0.01s CPU 0.01s WALL ( 1 calls)
Called by CPR:
cpr_md : 27.87s CPU 29.89s WALL ( 100 calls)
move_electro : 27.49s CPU 29.47s WALL ( 100 calls)
Called by move_electrons:
rhoofr : 5.73s CPU 5.80s WALL ( 100 calls)
vofrho : 17.89s CPU 19.77s WALL ( 100 calls)
dforce : 1.02s CPU 1.03s WALL ( 600 calls)
calphi : 0.02s CPU 0.02s WALL ( 100 calls)
newd : 2.68s CPU 2.71s WALL ( 100 calls)
nlfl : 0.00s CPU 0.00s WALL ( 100 calls)
Called by ortho:
ortho_iter : 0.00s CPU 0.00s WALL ( 200 calls)
rsg : 0.01s CPU 0.01s WALL ( 200 calls)
rhoset : 0.01s CPU 0.01s WALL ( 200 calls)
sigset : 0.01s CPU 0.01s WALL ( 200 calls)
tauset : 0.01s CPU 0.01s WALL ( 200 calls)
ortho : 0.08s CPU 0.08s WALL ( 100 calls)
updatc : 0.01s CPU 0.01s WALL ( 100 calls)
Small boxes:
rhov : 0.36s CPU 0.36s WALL ( 100 calls)
fftb : 1.57s CPU 1.58s WALL ( 9901 calls)
Low-level routines:
prefor : 0.02s CPU 0.02s WALL ( 201 calls)
nlfq : 0.06s CPU 0.06s WALL ( 100 calls)
nlsm1 : 0.02s CPU 0.02s WALL ( 101 calls)
nlsm2 : 0.06s CPU 0.06s WALL ( 100 calls)
fft : 3.74s CPU 3.83s WALL ( 2302 calls)
ffts : 0.14s CPU 0.14s WALL ( 200 calls)
fftw : 1.30s CPU 1.31s WALL ( 1800 calls)
betagx : 0.69s CPU 0.69s WALL ( 1 calls)
qradx : 0.48s CPU 0.48s WALL ( 1 calls)
nlinit : 1.26s CPU 1.27s WALL ( 1 calls)
init_dim : 0.01s CPU 0.01s WALL ( 1 calls)
newnlinit : 0.02s CPU 0.03s WALL ( 1 calls)
from_restart : 0.01s CPU 0.01s WALL ( 1 calls)
strucf : 0.02s CPU 0.02s WALL ( 101 calls)
calbec : 0.02s CPU 0.02s WALL ( 101 calls)
CP : 29.29s CPU 31.35s WALL
This run was terminated on: 20:26:39 24Apr2020
=------------------------------------------------------------------------------=
JOB DONE.
=------------------------------------------------------------------------------=