quantum-espresso/test-suite/cp_h2o/benchmark.out.git.inp=h2o-m...

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RUNNING ,mpirun -np 4 /u/r/rbertoss/q-e/test-suite/..//bin/cp.x -nk 1 -nd 1 -nb 1 -nt 1 -input h2o-mt-blyp-6.in
Program CP v.6.8 starts on 21Jul2021 at 17:25:31
This program is part of the open-source Quantum ESPRESSO suite
for quantum simulation of materials; please cite
"P. Giannozzi et al., J. Phys.:Condens. Matter 21 395502 (2009);
"P. Giannozzi et al., J. Phys.:Condens. Matter 29 465901 (2017);
"P. Giannozzi et al., J. Chem. Phys. 152 154105 (2020);
URL http://www.quantum-espresso.org",
in publications or presentations arising from this work. More details at
http://www.quantum-espresso.org/quote
Parallel version (MPI), running on 4 processors
MPI processes distributed on 1 nodes
R & G space division: proc/nbgrp/npool/nimage = 4
736 MiB available memory on the printing compute node when the environment starts
Reading input from h2o-mt-blyp-6.in
Job Title: Water Molecule
Atomic Pseudopotentials Parameters
----------------------------------
Reading pseudopotential for specie # 1 from file :
/u/r/rbertoss/q-e/test-suite/..//pseudo/O.blyp-mt.UPF
file type is xml
Reading pseudopotential for specie # 2 from file :
/u/r/rbertoss/q-e/test-suite/..//pseudo/H.blyp-vbc.UPF
file type is xml
Main Simulation Parameters (from input)
---------------------------------------
Restart Mode = 1 restart
Number of MD Steps = 100
Print out every 100 MD Steps
Reads from unit = 51
Writes to unit = 51
MD Simulation time step = 5.00
Electronic fictitious mass (emass) = 400.00
emass cut-off = 2.50
Simulation Cell Parameters (from input)
external pressure = 0.00 [KBar]
wmass (calculated) = 2493.41 [AU]
ibrav = 14
alat = 12.00000000
a1 = 12.00000000 0.00000000 0.00000000
a2 = 0.00000000 12.00000000 0.00000000
a3 = 0.00000000 0.00000000 12.00000000
b1 = 0.08333333 0.00000000 0.00000000
b2 = 0.00000000 0.08333333 0.00000000
b3 = 0.00000000 0.00000000 0.08333333
omega = 1728.00000000
Energy Cut-offs
---------------
Ecutwfc = 80.0 Ry, Ecutrho = 320.0 Ry, Ecuts = 320.0 Ry
Gcutwfc = 17.1 , Gcutrho = 34.2 Gcuts = 34.2
NOTA BENE: refg, mmx = 0.050000 7680
Eigenvalues calculated without the kinetic term contribution
Orthog. with lagrange multipliers : eps = 0.10E-08, max = 300
Electron dynamics with newton equations
Electron dynamics : the temperature is not controlled
Electronic states
-----------------
Number of Electrons= 8, of States = 4
Occupation numbers :
2.00 2.00 2.00 2.00
Exchange and correlations functionals
-------------------------------------
Exchange-correlation= SLA LYP B88 BLYP
( 1 3 1 3 0 0 0)
Ions Simulation Parameters
--------------------------
Ions are allowed to move
Ions dynamics with newton equations
the temperature is computed for 6 degrees of freedom
ion dynamics with fricp = 0.0000 and greasp = 1.0000
Ionic position (from input)
sorted by specie, and converted to real a.u. coordinates
Species 1 atoms = 1 mass = 29166.22 (a.u.), 16.00 (amu) rcmax = 0.80 (a.u.)
0.009900 0.009900 0.000000
Species 2 atoms = 2 mass = 1822.89 (a.u.), 1.00 (amu) rcmax = 0.80 (a.u.)
1.832500 -0.224300 -0.000100
-0.224300 1.832500 0.000200
Ionic position will be re-read from restart file
NOT all atoms are allowed to move
indx ..x.. ..y.. ..z..
1 F F F
Ionic temperature is not controlled
Cell Dynamics Parameters (from STDIN)
-------------------------------------
internal stress tensor calculated
Starting cell generated from CELLDM
Cell parameters will be re-read from restart file
Constant VOLUME Molecular dynamics
cell parameters are not allowed to move
Verbosity: iverbosity = 1
Simulation dimensions initialization
------------------------------------
unit vectors of full simulation cell
in real space: in reciprocal space (units 2pi/alat):
1 12.0000 0.0000 0.0000 1.0000 0.0000 0.0000
2 0.0000 12.0000 0.0000 0.0000 1.0000 0.0000
3 0.0000 0.0000 12.0000 0.0000 0.0000 1.0000
Parallelization info
--------------------
sticks: dense smooth PW G-vecs: dense smooth PW
Min 917 917 227 41757 41757 5201
Max 920 920 230 41764 41764 5206
Sum 3673 3673 917 167037 167037 20815
Using Slab Decomposition
Real Mesh
---------
Global Dimensions Local Dimensions Processor Grid
.X. .Y. .Z. .X. .Y. .Z. .X. .Y. .Z.
72 72 72 72 72 18 1 1 4
Array leading dimensions ( nr1x, nr2x, nr3x ) = 72 72 72
Local number of cell to store the grid ( nrxx ) = 93312
Number of x-y planes for each processors:
| 72, 18 | 72, 18 | 72, 18 | 72, 18 |
Using Slab Decomposition
Smooth Real Mesh
----------------
Global Dimensions Local Dimensions Processor Grid
.X. .Y. .Z. .X. .Y. .Z. .X. .Y. .Z.
72 72 72 72 72 18 1 1 4
Array leading dimensions ( nr1x, nr2x, nr3x ) = 72 72 72
Local number of cell to store the grid ( nrxx ) = 93312
Number of x-y planes for each processors:
| 72, 18 | 72, 18 | 72, 18 | 72, 18 |
Using Slab Decomposition
Reciprocal Space Mesh
---------------------
Large Mesh
Global(ngm_g) MinLocal MaxLocal Average
83519 20879 20882 20879.75
Smooth Mesh
Global(ngms_g) MinLocal MaxLocal Average
83519 20879 20882 20879.75
Wave function Mesh
Global(ngw_g) MinLocal MaxLocal Average
10408 2601 2603 2602.00
System geometry initialization
------------------------------
cell parameters read from restart file
ibrav = 14 cell parameters
cell at current step : h(t)
12.00000 0.00000 0.00000
0.00000 12.00000 0.00000
0.00000 0.00000 12.00000
cell at previous step : h(t-dt)
12.00000 0.00000 0.00000
0.00000 12.00000 0.00000
0.00000 0.00000 12.00000
Subspace diagonalization in iterative solution of the eigenvalue problem:
a serial algorithm will be used
Matrix Multiplication Performances
ortho mmul, time for parallel driver = 0.00000 with 1 procs
Constraints matrixes will be distributed block like on
ortho sub-group = 1* 1 procs
Pseudopotentials initialization
-------------------------------
Common initialization
Specie: 1
1 indv= 1 ang. mom= 0
dion
0.2253
Specie: 2
dion
Cell parameters from input file are used in electron mass preconditioning
init_tpiba2= 0.27415568
Short Legend and Physical Units in the Output
---------------------------------------------
NFI [int] - step index
EKINC [HARTREE A.U.] - kinetic energy of the fictitious electronic dynamics
TEMPH [K] - Temperature of the fictitious cell dynamics
TEMP [K] - Ionic temperature
ETOT [HARTREE A.U.] - Scf total energy (Kohn-Sham hamiltonian)
ENTHAL [HARTREE A.U.] - Enthalpy ( ETOT + P * V )
ECONS [HARTREE A.U.] - Enthalpy + kinetic energy of ions and cell
ECONT [HARTREE A.U.] - Constant of motion for the CP lagrangian
formf: eself= 18.94976
formf: vps(g=0)= -0.0061912 rhops(g=0)= -0.0033232
formf: vps(g=0)= -0.0060616 rhops(g=0)= -0.0031806
formf: vps(g=0)= -0.0060616 rhops(g=0)= -0.0031806
formf: vps(g=0)= -0.0058122 rhops(g=0)= -0.0029134
formf: vps(g=0)= -0.0058122 rhops(g=0)= -0.0029134
formf: sum_g vps(g)= -4.3546661 sum_g rhops(g)= -1.0540044
formf: vps(g=0)= -0.0011639 rhops(g=0)= -0.0005539
formf: vps(g=0)= -0.0011390 rhops(g=0)= -0.0005301
formf: vps(g=0)= -0.0011390 rhops(g=0)= -0.0005301
formf: vps(g=0)= -0.0010912 rhops(g=0)= -0.0004856
formf: vps(g=0)= -0.0010912 rhops(g=0)= -0.0004856
formf: sum_g vps(g)= -2.5239226 sum_g rhops(g)= -0.1756674
Delta V(G=0): 0.009308Ry, 0.253295eV
nfi ekinc temph tempp etot enthal econs econt vnhh xnhh0 vnhp xnhp0
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writing restart file (with schema): ./h2o_51.save/
restart : 0.01s CPU 0.11s WALL ( 1 calls)
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619 0.000238782125706 0.0 146.10 -17.176330972170 -17.176330972170 -17.174910756521 -17.174671974395 0.0000 0.0000 0.0000 0.0000
620 0.000212993581917 0.0 128.44 -17.176130131396 -17.176130131396 -17.174885000815 -17.174672007233 0.0000 0.0000 0.0000 0.0000
621 0.000185666253062 0.0 111.48 -17.175935104890 -17.175935104890 -17.174857645724 -17.174671979471 0.0000 0.0000 0.0000 0.0000
622 0.000157561568111 0.0 95.49 -17.175749511666 -17.175749511666 -17.174829513688 -17.174671952120 0.0000 0.0000 0.0000 0.0000
623 0.000129877306497 0.0 80.70 -17.175576795811 -17.175576795811 -17.174801808990 -17.174671931684 0.0000 0.0000 0.0000 0.0000
624 0.000103990427751 0.0 67.30 -17.175420195601 -17.175420195601 -17.174775953265 -17.174671962837 0.0000 0.0000 0.0000 0.0000
625 0.000081172554393 0.0 55.44 -17.175282525687 -17.175282525687 -17.174753209657 -17.174672037103 0.0000 0.0000 0.0000 0.0000
626 0.000062370621743 0.0 45.27 -17.175166145575 -17.175166145575 -17.174734503378 -17.174672132756 0.0000 0.0000 0.0000 0.0000
627 0.000048111385633 0.0 36.92 -17.175073004341 -17.175073004341 -17.174720358645 -17.174672247259 0.0000 0.0000 0.0000 0.0000
628 0.000038532380378 0.0 30.56 -17.175004661007 -17.175004661007 -17.174710873093 -17.174672340712 0.0000 0.0000 0.0000 0.0000
629 0.000033492968519 0.0 26.32 -17.174962469670 -17.174962469670 -17.174705928941 -17.174672435973 0.0000 0.0000 0.0000 0.0000
630 0.000032698507354 0.0 24.35 -17.174947492596 -17.174947492596 -17.174705201268 -17.174672502761 0.0000 0.0000 0.0000 0.0000
* Physical Quantities at step: 631
Pressure of Nuclei (GPa) 0.00286 631
Pressure Total (GPa) -0.77101 631
total energy = -17.17496054860 Hartree a.u.
kinetic energy = 12.43055 Hartree a.u.
electrostatic energy = -18.21120 Hartree a.u.
esr = 0.10843 Hartree a.u.
eself = 18.94976 Hartree a.u.
pseudopotential energy = -9.20965 Hartree a.u.
n-l pseudopotential energy = 1.98332 Hartree a.u.
exchange-correlation energy = -4.16798 Hartree a.u.
average potential = 0.00000 Hartree a.u.
Eigenvalues (eV), kp = 1 , spin = 1
-24.42 -12.25 -9.03 -6.87
CELL_PARAMETERS
12.00000000 0.00000000 0.00000000
0.00000000 12.00000000 0.00000000
0.00000000 0.00000000 12.00000000
System Density [g/cm^3] : 0.1167302083
System Volume [A.U.^3] : 1728.0000000000
Center of mass square displacement (a.u.): 0.000108
Total stress (GPa)
-0.51665769 0.12786628 0.02280555
0.12786628 -1.67709246 -0.05051963
0.02280555 -0.05051963 -0.11927711
ATOMIC_POSITIONS
O 0.99000000000000E-02 0.99000000000000E-02 0.00000000000000E+00
H 0.18583582835038E+01 -0.18245626115725E+00 -0.12161447174482E+00
H -0.18182743317723E+00 0.19565314856453E+01 0.68724769917686E-01
ATOMIC_VELOCITIES
O 0.00000000000000E+00 0.00000000000000E+00 0.00000000000000E+00
H 0.71782132116771E-04 -0.36797415041973E-03 -0.47852044680079E-04
H -0.33323622203872E-03 -0.14511137630097E-03 0.41785197858990E-04
Forces acting on atoms (au):
O 0.88811792269619E-02 0.46470589252642E-01 0.78591618493055E-03
H -0.99158828467439E-02 -0.15084420844608E-03 0.60341494678375E-03
H 0.27988184475806E-02 -0.42248439352951E-01 -0.13894583521631E-02
Partial temperatures (for each ionic specie)
Species Temp (K) Mean Square Displacement (a.u.)
1 3.14E+00 1.0800E-04
2 2.32E+01 1.7698E-02
631 0.000035787354756 0.0 24.78 -17.174960548595 -17.174960548595 -17.174708354560 -17.174672567205 0.0000 0.0000 0.0000 0.0000
writing restart file (with schema): ./h2o_51.save/
restart : 0.02s CPU 0.21s WALL ( 2 calls)
Averaged Physical Quantities
accumulated this run
ekinc : 0.06726 0.00026 (AU)
ekin : 12.35521 12.56054 (AU)
epot : -31.19303 -31.70253 (AU)
total energy : -16.83365 -17.17642 (AU)
temperature : 128.51368 151.08475 (K )
enthalpy : -16.80643 -17.17642 (AU)
econs : -16.83237 -17.17493 (AU)
pressure : 0.79191 -0.20575 (Gpa)
volume : 1728.00000 1728.00000 (AU)
Called by MAIN_LOOP:
initialize : 0.45s CPU 0.48s WALL ( 1 calls)
main_loop : 13.65s CPU 14.40s WALL ( 100 calls)
cpr_total : 13.67s CPU 14.61s WALL ( 1 calls)
Called by INIT_RUN:
init_readfil : 0.03s CPU 0.04s WALL ( 1 calls)
Called by CPR:
cpr_md : 13.67s CPU 14.61s WALL ( 100 calls)
move_electro : 13.43s CPU 14.15s WALL ( 100 calls)
Called by move_electrons:
rhoofr : 2.29s CPU 2.34s WALL ( 100 calls)
vofrho : 10.15s CPU 10.80s WALL ( 100 calls)
dforce : 0.90s CPU 0.92s WALL ( 200 calls)
calphi : 0.01s CPU 0.01s WALL ( 100 calls)
nlfl : 0.00s CPU 0.00s WALL ( 100 calls)
Called by ortho:
ortho_iter : 0.00s CPU 0.00s WALL ( 100 calls)
rsg : 0.00s CPU 0.00s WALL ( 100 calls)
rhoset : 0.01s CPU 0.02s WALL ( 100 calls)
sigset : 0.01s CPU 0.01s WALL ( 100 calls)
tauset : 0.01s CPU 0.01s WALL ( 100 calls)
ortho : 0.04s CPU 0.04s WALL ( 100 calls)
updatc : 0.01s CPU 0.01s WALL ( 100 calls)
Small boxes:
Low-level routines:
prefor : 0.01s CPU 0.01s WALL ( 201 calls)
nlfq : 0.02s CPU 0.02s WALL ( 100 calls)
nlsm1 : 0.00s CPU 0.00s WALL ( 101 calls)
nlsm2 : 0.02s CPU 0.02s WALL ( 100 calls)
fft : 3.07s CPU 3.32s WALL ( 802 calls)
ffts : 0.74s CPU 0.77s WALL ( 200 calls)
fftw : 1.10s CPU 1.12s WALL ( 600 calls)
betagx : 0.12s CPU 0.12s WALL ( 1 calls)
qradx : 0.00s CPU 0.00s WALL ( 1 calls)
nlinit : 0.38s CPU 0.38s WALL ( 1 calls)
init_dim : 0.02s CPU 0.03s WALL ( 1 calls)
newnlinit : 0.06s CPU 0.06s WALL ( 1 calls)
from_restart : 0.01s CPU 0.01s WALL ( 1 calls)
strucf : 0.08s CPU 0.08s WALL ( 101 calls)
calbec : 0.00s CPU 0.01s WALL ( 101 calls)
exch_corr : 7.45s CPU 7.91s WALL ( 100 calls)
CP : 14.13s CPU 15.12s WALL
This run was terminated on: 17:25:46 21Jul2021
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JOB DONE.
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