quantum-espresso/test-suite/cp_h2o/benchmark.out.git.inp=h2o-m...

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RUNNING , /home/giannozz/q-e-pseudolib/test-suite/..//bin/cp.x -input h2o-mt-blyp-4.in
Program CP v.6.5 starts on 24Apr2020 at 20:23:48
This program is part of the open-source Quantum ESPRESSO suite
for quantum simulation of materials; please cite
"P. Giannozzi et al., J. Phys.:Condens. Matter 21 395502 (2009);
"P. Giannozzi et al., J. Phys.:Condens. Matter 29 465901 (2017);
URL http://www.quantum-espresso.org",
in publications or presentations arising from this work. More details at
http://www.quantum-espresso.org/quote
Parallel version (MPI), running on 1 processors
MPI processes distributed on 1 nodes
Fft bands division: nmany = 1
Reading input from h2o-mt-blyp-4.in
Job Title: Water Molecule
Atomic Pseudopotentials Parameters
----------------------------------
Reading pseudopotential for specie # 1 from file :
/home/giannozz/q-e-pseudolib/test-suite/..//pseudo/O.blyp-mt.UPF
file type is UPF v.2
Reading pseudopotential for specie # 2 from file :
/home/giannozz/q-e-pseudolib/test-suite/..//pseudo/H.blyp-vbc.UPF
file type is UPF v.2
Main Simulation Parameters (from input)
---------------------------------------
Restart Mode = 1 restart
Number of MD Steps = 200
Print out every 100 MD Steps
Reads from unit = 51
Writes to unit = 51
MD Simulation time step = 5.00
Electronic fictitious mass (emass) = 400.00
emass cut-off = 2.50
Simulation Cell Parameters (from input)
external pressure = 0.00 [KBar]
wmass (calculated) = 2493.41 [AU]
ibrav = 14
alat = 12.00000000
a1 = 12.00000000 0.00000000 0.00000000
a2 = 0.00000000 12.00000000 0.00000000
a3 = 0.00000000 0.00000000 12.00000000
b1 = 0.08333333 0.00000000 0.00000000
b2 = 0.00000000 0.08333333 0.00000000
b3 = 0.00000000 0.00000000 0.08333333
omega = 1728.00000000
Energy Cut-offs
---------------
Ecutwfc = 80.0 Ry, Ecutrho = 320.0 Ry, Ecuts = 320.0 Ry
Gcutwfc = 17.1 , Gcutrho = 34.2 Gcuts = 34.2
NOTA BENE: refg, mmx = 0.050000 7680
Eigenvalues calculated without the kinetic term contribution
Orthog. with lagrange multipliers : eps = 0.10E-08, max = 300
Electron dynamics with newton equations
Electron dynamics : the temperature is not controlled
Electronic states
-----------------
Number of Electrons= 8, of States = 4
Occupation numbers :
2.00 2.00 2.00 2.00
Exchange and correlations functionals
-------------------------------------
Exchange-correlation= SLA LYP B88 BLYP
( 1 3 1 3 0 0 0)
Ions Simulation Parameters
--------------------------
Ions are allowed to move
Ions dynamics with newton equations
the temperature is computed for 6 degrees of freedom
ion dynamics with fricp = 0.0000 and greasp = 1.0000
Ionic position (from input)
sorted by specie, and converted to real a.u. coordinates
Species 1 atoms = 1 mass = 29166.22 (a.u.), 16.00 (amu) rcmax = 0.80 (a.u.)
0.009900 0.009900 0.000000
Species 2 atoms = 2 mass = 1822.89 (a.u.), 1.00 (amu) rcmax = 0.80 (a.u.)
1.832500 -0.224300 -0.000100
-0.224300 1.832500 0.000200
Ionic position will be re-read from restart file
NOT all atoms are allowed to move
indx ..x.. ..y.. ..z..
1 F F F
Ionic temperature is not controlled
Cell Dynamics Parameters (from STDIN)
-------------------------------------
internal stress tensor calculated
Starting cell generated from CELLDM
Cell parameters will be re-read from restart file
Constant VOLUME Molecular dynamics
cell parameters are not allowed to move
Verbosity: iverbosity = 1
Simulation dimensions initialization
------------------------------------
unit vectors of full simulation cell
in real space: in reciprocal space (units 2pi/alat):
1 12.0000 0.0000 0.0000 1.0000 0.0000 0.0000
2 0.0000 12.0000 0.0000 0.0000 1.0000 0.0000
3 0.0000 0.0000 12.0000 0.0000 0.0000 1.0000
G-vector sticks info
--------------------
sticks: dense smooth PW G-vecs: dense smooth PW
Sum 3673 3673 917 167037 167037 20815
Real Mesh
---------
Global Dimensions Local Dimensions Processor Grid
.X. .Y. .Z. .X. .Y. .Z. .X. .Y. .Z.
72 72 72 72 72 72 1 1 1
Array leading dimensions ( nr1x, nr2x, nr3x ) = 72 72 72
Local number of cell to store the grid ( nrxx ) = 373248
Number of x-y planes for each processors:
| 72, 72 |
Smooth Real Mesh
----------------
Global Dimensions Local Dimensions Processor Grid
.X. .Y. .Z. .X. .Y. .Z. .X. .Y. .Z.
72 72 72 72 72 72 1 1 1
Array leading dimensions ( nr1x, nr2x, nr3x ) = 72 72 72
Local number of cell to store the grid ( nrxx ) = 373248
Number of x-y planes for each processors:
| 72, 72 |
Reciprocal Space Mesh
---------------------
Large Mesh
Global(ngm_g) MinLocal MaxLocal Average
83519 83519 83519 83519.00
Smooth Mesh
Global(ngms_g) MinLocal MaxLocal Average
83519 83519 83519 83519.00
Wave function Mesh
Global(ngw_g) MinLocal MaxLocal Average
10408 10408 10408 10408.00
System geometry initialization
------------------------------
cell parameters read from restart file
ibrav = 14 cell parameters
cell at current step : h(t)
12.00000 0.00000 0.00000
0.00000 12.00000 0.00000
0.00000 0.00000 12.00000
cell at previous step : h(t-dt)
12.00000 0.00000 0.00000
0.00000 12.00000 0.00000
0.00000 0.00000 12.00000
Matrix Multiplication Performances
ortho mmul, time for parallel driver = 0.00000 with 1 procs
Constraints matrixes will be distributed block like on
ortho sub-group = 1* 1 procs
Pseudopotentials initialization
-------------------------------
Common initialization
Specie: 1
1 indv= 1 ang. mom= 0
dion
0.2253
Specie: 2
dion
Cell parameters from input file are used in electron mass preconditioning
init_tpiba2= 0.27415568
Short Legend and Physical Units in the Output
---------------------------------------------
NFI [int] - step index
EKINC [HARTREE A.U.] - kinetic energy of the fictitious electronic dynamics
TEMPH [K] - Temperature of the fictitious cell dynamics
TEMP [K] - Ionic temperature
ETOT [HARTREE A.U.] - Scf total energy (Kohn-Sham hamiltonian)
ENTHAL [HARTREE A.U.] - Enthalpy ( ETOT + P * V )
ECONS [HARTREE A.U.] - Enthalpy + kinetic energy of ions and cell
ECONT [HARTREE A.U.] - Constant of motion for the CP lagrangian
formf: eself= 18.94976
formf: vps(g=0)= -0.0063239 rhops(g=0)= -0.0034722
formf: vps(g=0)= -0.0061912 rhops(g=0)= -0.0033232
formf: vps(g=0)= -0.0061912 rhops(g=0)= -0.0033232
formf: vps(g=0)= -0.0061912 rhops(g=0)= -0.0033232
formf: vps(g=0)= -0.0060616 rhops(g=0)= -0.0031806
formf: sum_g vps(g)= -4.3546661 sum_g rhops(g)= -1.0540044
formf: vps(g=0)= -0.0011896 rhops(g=0)= -0.0005787
formf: vps(g=0)= -0.0011639 rhops(g=0)= -0.0005539
formf: vps(g=0)= -0.0011639 rhops(g=0)= -0.0005539
formf: vps(g=0)= -0.0011639 rhops(g=0)= -0.0005539
formf: vps(g=0)= -0.0011390 rhops(g=0)= -0.0005301
formf: sum_g vps(g)= -2.5239226 sum_g rhops(g)= -0.1756674
Delta V(G=0): 0.009308Ry, 0.253295eV
nfi ekinc temph tempp etot enthal econs econt vnhh xnhh0 vnhp xnhp0
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writing restart file (with schema): ./h2o_51.save/
restart : 0.01s CPU 0.01s WALL ( 1 calls)
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494 0.000415966345250 0.0 200.62 -17.177023868642 -17.177023868642 -17.174988988565 -17.174573022220 0.0000 0.0000 0.0000 0.0000
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496 0.000315158277019 0.0 154.45 -17.176453562035 -17.176453562035 -17.174886903662 -17.174571745385 0.0000 0.0000 0.0000 0.0000
497 0.000264445650731 0.0 130.49 -17.176159651834 -17.176159651834 -17.174835578821 -17.174571133170 0.0000 0.0000 0.0000 0.0000
498 0.000215770194798 0.0 106.81 -17.175870528838 -17.175870528838 -17.174786267064 -17.174570496869 0.0000 0.0000 0.0000 0.0000
499 0.000170475880480 0.0 84.06 -17.175594416577 -17.175594416577 -17.174740315983 -17.174569840103 0.0000 0.0000 0.0000 0.0000
500 0.000129656876800 0.0 62.97 -17.175339503262 -17.175339503262 -17.174698896902 -17.174569240025 0.0000 0.0000 0.0000 0.0000
writing restart file (with schema): ./h2o_51.save/
restart : 0.01s CPU 0.02s WALL ( 2 calls)
501 0.000094218807030 0.0 44.19 -17.175113482409 -17.175113482409 -17.174662872241 -17.174568653434 0.0000 0.0000 0.0000 0.0000
502 0.000064935113198 0.0 28.38 -17.174923468226 -17.174923468226 -17.174633069802 -17.174568134689 0.0000 0.0000 0.0000 0.0000
503 0.000042471641231 0.0 16.05 -17.174775516400 -17.174775516400 -17.174610159620 -17.174567687979 0.0000 0.0000 0.0000 0.0000
504 0.000027374162505 0.0 7.64 -17.174674396335 -17.174674396335 -17.174594741757 -17.174567367594 0.0000 0.0000 0.0000 0.0000
505 0.000020033260776 0.0 3.40 -17.174623168893 -17.174623168893 -17.174587164542 -17.174567131282 0.0000 0.0000 0.0000 0.0000
506 0.000020656550198 0.0 3.45 -17.174623198783 -17.174623198783 -17.174587676456 -17.174567019906 0.0000 0.0000 0.0000 0.0000
507 0.000029275474502 0.0 7.75 -17.174674014739 -17.174674014739 -17.174596311467 -17.174567035992 0.0000 0.0000 0.0000 0.0000
508 0.000045782226747 0.0 16.08 -17.174773430858 -17.174773430858 -17.174612922437 -17.174567140210 0.0000 0.0000 0.0000 0.0000
509 0.000069958656730 0.0 28.11 -17.174917855123 -17.174917855123 -17.174637303957 -17.174567345300 0.0000 0.0000 0.0000 0.0000
510 0.000101447887371 0.0 43.39 -17.175102482678 -17.175102482678 -17.174669128745 -17.174567680858 0.0000 0.0000 0.0000 0.0000
511 0.000139644836268 0.0 61.39 -17.175321370048 -17.175321370048 -17.174707727259 -17.174568082423 0.0000 0.0000 0.0000 0.0000
512 0.000183538673867 0.0 81.54 -17.175567815639 -17.175567815639 -17.174752170894 -17.174568632220 0.0000 0.0000 0.0000 0.0000
513 0.000231589667364 0.0 103.24 -17.175834211744 -17.175834211744 -17.174800855267 -17.174569265600 0.0000 0.0000 0.0000 0.0000
514 0.000281732849179 0.0 125.88 -17.176112480244 -17.176112480244 -17.174851718795 -17.174569985946 0.0000 0.0000 0.0000 0.0000
515 0.000331554877399 0.0 148.89 -17.176394261349 -17.176394261349 -17.174902277454 -17.174570722577 0.0000 0.0000 0.0000 0.0000
516 0.000378607672563 0.0 171.69 -17.176671464478 -17.176671464478 -17.174950083675 -17.174571476002 0.0000 0.0000 0.0000 0.0000
517 0.000420752320156 0.0 193.76 -17.176936515162 -17.176936515162 -17.174992930322 -17.174572178001 0.0000 0.0000 0.0000 0.0000
518 0.000456412237441 0.0 214.59 -17.177182790987 -17.177182790987 -17.175029271057 -17.174572858819 0.0000 0.0000 0.0000 0.0000
519 0.000484666577399 0.0 233.70 -17.177404608197 -17.177404608197 -17.175058193028 -17.174573526450 0.0000 0.0000 0.0000 0.0000
520 0.000505196928546 0.0 250.65 -17.177597207399 -17.177597207399 -17.175079366390 -17.174574169461 0.0000 0.0000 0.0000 0.0000
521 0.000518162491249 0.0 265.05 -17.177756806473 -17.177756806473 -17.175093022166 -17.174574859675 0.0000 0.0000 0.0000 0.0000
522 0.000524085388745 0.0 276.54 -17.177880313960 -17.177880313960 -17.175099546829 -17.174575461440 0.0000 0.0000 0.0000 0.0000
523 0.000523781982466 0.0 284.85 -17.177965757211 -17.177965757211 -17.175099756616 -17.174575974633 0.0000 0.0000 0.0000 0.0000
524 0.000518309435934 0.0 289.79 -17.178012250540 -17.178012250540 -17.175094698227 -17.174576388791 0.0000 0.0000 0.0000 0.0000
525 0.000508867122197 0.0 291.26 -17.178020050497 -17.178020050497 -17.175085553077 -17.174576685954 0.0000 0.0000 0.0000 0.0000
526 0.000496620228703 0.0 289.28 -17.177990573598 -17.177990573598 -17.175073552806 -17.174576932578 0.0000 0.0000 0.0000 0.0000
527 0.000482475383598 0.0 284.00 -17.177926076025 -17.177926076025 -17.175059632755 -17.174577157372 0.0000 0.0000 0.0000 0.0000
528 0.000466891425277 0.0 275.64 -17.177829347683 -17.177829347683 -17.175044191205 -17.174577299779 0.0000 0.0000 0.0000 0.0000
529 0.000449818145789 0.0 264.55 -17.177703761592 -17.177703761592 -17.175027294594 -17.174577476448 0.0000 0.0000 0.0000 0.0000
* Physical Quantities at step: 530
Pressure of Nuclei (GPa) 0.02887 530
Pressure Total (GPa) -0.31781 530
total energy = -17.17755273975 Hartree a.u.
kinetic energy = 12.55847 Hartree a.u.
electrostatic energy = -18.19428 Hartree a.u.
esr = 0.13413 Hartree a.u.
eself = 18.94976 Hartree a.u.
pseudopotential energy = -9.30272 Hartree a.u.
n-l pseudopotential energy = 1.95551 Hartree a.u.
exchange-correlation energy = -4.19453 Hartree a.u.
average potential = 0.00000 Hartree a.u.
Eigenvalues (eV), kp = 1 , spin = 1
-24.61 -12.81 -8.76 -6.89
CELL_PARAMETERS
12.00000000 0.00000000 0.00000000
0.00000000 12.00000000 0.00000000
0.00000000 0.00000000 12.00000000
System Density [g/cm^3] : 0.1167302083
System Volume [A.U.^3] : 1728.0000000000
Center of mass square displacement (a.u.): 0.000029
Total stress (GPa)
-0.12784143 0.29861167 0.00751742
0.29861167 -0.70887414 -0.03093229
0.00751742 -0.03093229 -0.11672884
ATOMIC_POSITIONS
O 0.99000000000000E-02 0.99000000000000E-02 0.00000000000000E+00
H 0.18101410753519E+01 -0.28531977234295E+00 -0.10651703997346E+00
H -0.28071322461832E+00 0.18631153014296E+01 0.59722048525331E-01
ATOMIC_VELOCITIES
O 0.00000000000000E+00 0.00000000000000E+00 0.00000000000000E+00
H 0.43103981067285E-03 0.12529772810710E-03 -0.45475358152296E-04
H -0.66762589281417E-04 0.16062143369286E-02 0.60275354325454E-04
Forces acting on atoms (au):
O -0.99213561041778E-02 0.13828553043555E-01 0.94881538350824E-03
H 0.15528238143646E-02 0.53447392400639E-02 -0.12445357706141E-03
H 0.83654796069651E-02 -0.18210974624458E-01 -0.73375566886648E-03
Partial temperatures (for each ionic specie)
Species Temp (K) Mean Square Displacement (a.u.)
1 2.97E+01 2.8792E-05
2 2.36E+02 1.1116E-02
530 0.000430801741682 0.0 251.13 -17.177552739747 -17.177552739747 -17.175008372318 -17.174577570577 0.0000 0.0000 0.0000 0.0000
writing restart file (with schema): ./h2o_51.save/
restart : 0.02s CPU 0.03s WALL ( 3 calls)
Averaged Physical Quantities
accumulated this run
ekinc : 0.08003 0.00029 (AU)
ekin : 12.31610 12.60431 (AU)
epot : -31.09597 -31.73808 (AU)
total energy : -16.76833 -17.17649 (AU)
temperature : 124.05470 162.01611 (K )
enthalpy : -16.76833 -17.17649 (AU)
econs : -16.76709 -17.17487 (AU)
pressure : 0.98231 -0.04237 (Gpa)
volume : 1728.00000 1728.00000 (AU)
Called by MAIN_LOOP:
initialize : 0.14s CPU 0.17s WALL ( 1 calls)
main_loop : 32.28s CPU 35.34s WALL ( 200 calls)
cpr_total : 32.31s CPU 35.38s WALL ( 1 calls)
Called by INIT_RUN:
init_readfil : 0.02s CPU 0.03s WALL ( 1 calls)
Called by CPR:
cpr_md : 32.31s CPU 35.38s WALL ( 200 calls)
move_electro : 31.75s CPU 34.79s WALL ( 200 calls)
Called by move_electrons:
rhoofr : 5.39s CPU 5.56s WALL ( 200 calls)
vofrho : 22.54s CPU 25.41s WALL ( 200 calls)
dforce : 3.64s CPU 3.65s WALL ( 400 calls)
calphi : 0.03s CPU 0.03s WALL ( 200 calls)
nlfl : 0.00s CPU 0.00s WALL ( 200 calls)
Called by ortho:
ortho_iter : 0.00s CPU 0.00s WALL ( 200 calls)
rsg : 0.01s CPU 0.01s WALL ( 200 calls)
rhoset : 0.03s CPU 0.03s WALL ( 200 calls)
sigset : 0.01s CPU 0.02s WALL ( 200 calls)
tauset : 0.01s CPU 0.01s WALL ( 200 calls)
ortho : 0.07s CPU 0.08s WALL ( 200 calls)
updatc : 0.01s CPU 0.01s WALL ( 200 calls)
Small boxes:
Low-level routines:
prefor : 0.01s CPU 0.01s WALL ( 401 calls)
nlfq : 0.04s CPU 0.04s WALL ( 200 calls)
nlsm1 : 0.01s CPU 0.01s WALL ( 201 calls)
nlsm2 : 0.03s CPU 0.04s WALL ( 200 calls)
fft : 6.79s CPU 6.84s WALL ( 1603 calls)
ffts : 1.66s CPU 1.66s WALL ( 400 calls)
fftw : 4.89s CPU 4.95s WALL ( 1200 calls)
betagx : 0.04s CPU 0.04s WALL ( 1 calls)
qradx : 0.00s CPU 0.00s WALL ( 1 calls)
nlinit : 0.08s CPU 0.08s WALL ( 1 calls)
init_dim : 0.02s CPU 0.03s WALL ( 1 calls)
newnlinit : 0.00s CPU 0.00s WALL ( 1 calls)
from_restart : 0.01s CPU 0.02s WALL ( 1 calls)
strucf : 0.27s CPU 0.27s WALL ( 201 calls)
calbec : 0.01s CPU 0.01s WALL ( 201 calls)
CP : 32.48s CPU 35.58s WALL
This run was terminated on: 20:24:24 24Apr2020
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JOB DONE.
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