Jeongnim Kim
9884e7181d
Add a common function to initialize temporary containers.
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6281 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2014-03-27 11:13:38 +00:00
Jeongnim Kim
b1fb732226
Bug fixes with the broken tiling.
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6280 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2014-03-26 17:44:00 +00:00
Jeongnim Kim
1b3cfdd15c
Localization is done but activated. Constraints on the ionic positions for PBC. TBA.
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6279 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2014-03-24 21:50:13 +00:00
Jeongnim Kim
2fc60818cf
Add memory tracking and other things to get ready for the functional multi-grid implementation.
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6278 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2014-03-24 21:47:49 +00:00
Jeongnim Kim
6df70f75c8
Add memory_allocated to QMCState. Large objects can add how much memory in byte is allocated.
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Use grep:
grep MEMORY qmc.stdout
MEMORY increase 425 MB BsplineSetReder
MEMORY increase 0 MB VMCSingleOMP::resetRun
Another useful memory information:
grep "Anonymous Buffer" qmc.stdout => size of buffer per walker, scales as N^2
git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6277 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2014-03-24 21:45:19 +00:00
Jeongnim Kim
274cbdebef
Add PCID (PrimitiveCellID) to map the atoms in a supercell to the atoms in a primitive cell.
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Without tilining: PCID==ID
git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6276 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2014-03-24 18:26:19 +00:00
Jeongnim Kim
d480634f43
Add "rmax_ecp" to Ionic species. Will be used by the multigrid methods to determine the subdomains.
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6275 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2014-03-24 13:54:58 +00:00
Jeongnim Kim
da7f1f4da1
Reference implementation for the atom-centered multi-grid method. This increases the memory use and is not used.
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6272 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2014-03-20 17:50:46 +00:00
Cynthia Gu
76efcacbc0
remove prints
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6271 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2014-03-17 20:50:50 +00:00
Cynthia Gu
1ec3f75bea
change for staging
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6269 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2014-03-17 20:35:54 +00:00
Cynthia Gu
3dc3602290
change for staging
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6268 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2014-03-17 20:35:08 +00:00
Cynthia Gu
ba83c699b7
change for staging
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6267 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2014-03-14 20:02:06 +00:00
Raymond Clay
69a8b77541
One and two-body jastrows give Hessians wrt electron coordinates
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6265 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2014-03-13 18:22:09 +00:00
Raymond Clay
2b7a55e2b3
evaluateHessian added to TrialWavefunction and OrbitalBase. Currently works with DiracDeterminant.
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6262 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2014-03-12 00:42:54 +00:00
Raymond Clay
bd8fef9dfa
Fixed bugs in EinsplineSet related to calculating Hessians in non-orthorhombic unit cells. Backflow problem resolved as well.
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6261 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2014-03-11 23:27:02 +00:00
Jeongnim Kim
a63b16e505
Pointer fix.
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6259 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2014-02-28 14:47:36 +00:00
Raymond Clay
9623c3dd63
CS VMC probably not threadsafe at the moment. single thread works
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6258 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2014-02-28 03:18:25 +00:00
Jeongnim Kim
506ca88fde
Bug fix: atom-centered electron initialization of a charged system.
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6257 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2014-02-26 20:19:13 +00:00
Jeongnim Kim
852c2e0661
Add evaluateVP with VirtualParticleSet but not enabled.
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Add test vectorized wfs evaluations
git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6256 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2014-02-25 16:51:44 +00:00
Jeongnim Kim
ea14ba83e5
Vctorized evaluation functions to handle virtual moves, e.g., non-local PP.
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* Not being used by other classes
* Need optimizations of distance tables to bypass BCs.
git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6255 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2014-02-25 16:00:26 +00:00
Raymond Clay
a3ad82bcff
Eliminate PBC force chatter
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6254 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2014-02-24 21:49:10 +00:00
Jeongnim Kim
0b98501091
Comment out error message with a low acceptance rate.
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6253 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2014-02-24 20:56:11 +00:00
Raymond Clay
517654acc8
Reverting unintentional changes
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6252 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2014-02-24 20:08:31 +00:00
Raymond Clay
f2d670a7fe
CSVMC (all electron) with openMP parallelization works with and without drift. Checkpointing and support stuff not guaranteed, but this should be usable.
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6251 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2014-02-24 20:01:27 +00:00
Jeongnim Kim
cbf90aa337
Change default mcwalkerset@version="0 4".
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6250 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2014-02-24 13:48:09 +00:00
Jeongnim Kim
88df92fae3
Handling of ESHDF:
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* use href as a trigger to return
* add ions and eles to the pool only when they are created.
git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6249 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2014-02-21 21:53:36 +00:00
Raymond Clay
a3093601f8
CSVMC parallelized over walkers. Seems to work, but still testing
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6248 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2014-02-21 20:14:16 +00:00
Raymond Clay
9da392f575
cleanup
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6247 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2014-02-21 03:44:59 +00:00
Raymond Clay
48672d33a0
CSVMC with drift works for all electron moves.
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6246 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2014-02-21 03:40:27 +00:00
Jeongnim Kim
f1a71c71a1
overwrite truncate with QMC_CUDA=1
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6245 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2014-02-20 22:33:14 +00:00
Raymond Clay
21f5f8d4c5
Agressive handling of stuck reptiles.
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6244 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2014-02-20 20:21:51 +00:00
Jeongnim Kim
ad5d6a98ed
Handle multiple wavefunctions with multiple ions without defining them in advance.
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6243 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2014-02-20 16:55:35 +00:00
Raymond Clay
eae512c75e
compatible with old libxml2 versions. some safeguards.
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6242 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2014-02-19 21:18:52 +00:00
Jeongnim Kim
a8a8ff71e4
Fix to 2.9.1 to use the new xpath
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6241 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2014-02-19 19:59:58 +00:00
Raymond Clay
0fb1f1bed3
Revert LRHandlerTemp.h to 6221
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6240 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2014-02-19 17:58:16 +00:00
Jeongnim Kim
f74bf2cd14
The OhmmsXPathObject constructor always take a global xpath expression.
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Add a guard to choose (a) local xpath with libxml2 2.9.x and higher and (b) global path.
git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6239 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2014-02-19 14:48:23 +00:00
Raymond Clay
153904b661
RMC working in main branch
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6238 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2014-02-19 00:27:28 +00:00
Raymond Clay
0100a05167
all electron VMC correlated sampling working on main branch.
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6237 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2014-02-18 23:58:26 +00:00
Raymond Clay
34887855b7
If ion particleset not already initialized, read from hdf5.
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6236 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2014-02-18 22:33:25 +00:00
Raymond Clay
f2a1225dc4
If cur specified in OhmmsXPathObject, set cur as context.
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6235 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2014-02-18 22:31:33 +00:00
Raymond Clay
797826a26d
kill debug chatter in LRHandler
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6234 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2014-02-17 23:22:15 +00:00
Raymond Clay
4b4006bbab
LRHandler for Natoli breakup
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6233 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2014-02-17 18:45:42 +00:00
Raymond Clay
a438c5dd8e
The Chiesa force estimators for PBC.
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6232 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2014-02-17 18:41:45 +00:00
Raymond Clay
abab23d75a
LPQHI Basis with coulomb singularity included. Gradient optimization for LR breakup also included (previous commit)
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6231 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2014-02-17 18:39:46 +00:00
Jeongnim Kim
30a322a384
Format if.
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6230 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2014-02-17 18:37:15 +00:00
Raymond Clay
ade319fb17
Added Periodic Chiesa Force estimators. Supplemental Natoli LR Breakup
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6229 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2014-02-17 18:34:17 +00:00
Jaron Krogel
16524afb08
trace_density (hdf) tool is ready for production testing
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6228 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2014-02-14 21:18:27 +00:00
Jeongnim Kim
e4898bc1a0
Cleanup header to make GNU compilers happy.
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6227 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2014-02-14 19:38:22 +00:00
Cynthia Gu
e60b21b3b7
change adios file name for performance test
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6225 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2014-02-14 14:49:42 +00:00
Jeongnim Kim
f0e1bedd27
Back to numerical gradients with qmc@method="optimize"
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6224 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2014-02-12 20:49:06 +00:00
Jeongnim Kim
4e80707fbd
Evaluation functions using VirtualParticleSet. Need tuning.
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6223 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2014-02-12 20:08:26 +00:00
Jeongnim Kim
de476a2eed
Add missing functions and fixes for gemm.
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6220 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2014-02-11 13:42:40 +00:00
Jeongnim Kim
e8631e8819
Update ParticleSet if virtual moves are used. Currently, not used by will be turned on by NonLocalPP and estimators such as moementum estimators.
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6218 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2014-02-10 19:38:26 +00:00
Jeongnim Kim
950fb3775b
Add transpose functions for the distance tables with the virtual moves. More note coming.
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6217 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2014-02-10 18:06:27 +00:00
Jeongnim Kim
132ffabd6a
A ParticleSet to handle virtual moves, e.g., sphere integrations, efficiently.
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6216 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2014-02-10 17:49:37 +00:00
Cynthia Gu
28900906fb
redesign adios file layout
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6214 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2014-02-07 16:14:46 +00:00
Jeongnim Kim
e8fcba4145
Add --noprint to supress writing J*.dat and *pp.dat.
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6209 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2014-02-06 19:57:52 +00:00
Cynthia Gu
fc24195e33
redesign adios file layout
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6198 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2014-02-06 16:05:09 +00:00
Cynthia Gu
161435e78f
redesign adios file layout
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6196 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2014-02-05 21:19:44 +00:00
Cynthia Gu
e9ea60d0d9
Redesign adios file layout
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6195 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2014-02-05 20:52:34 +00:00
Cynthia Gu
65886cebb5
redesign adios file layout
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6194 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2014-02-05 16:39:50 +00:00
Jeongnim Kim
df6096fb83
Update drivers to be able to use nlpp gradients. Really slow.
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6191 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2014-02-02 14:58:07 +00:00
Jaron Krogel
b4cee3e077
patch for spin density (periodic only)
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6186 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2014-01-27 19:48:55 +00:00
Jeongnim Kim
927de06e6f
A tool to compute density from trace.
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6185 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2014-01-24 17:34:35 +00:00
Jeongnim Kim
cc8c632869
Implement hyperslab read.
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6184 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2014-01-24 14:51:55 +00:00
Jeongnim Kim
2f7d75b562
Add NLPP derivative test.
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6182 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2014-01-22 17:03:34 +00:00
Jeongnim Kim
4a9410fa30
Add functions to evaluate derivatives of non-local PP wrt optimizables.
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6181 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2014-01-22 16:58:36 +00:00
Jeongnim Kim
a695e7ddc3
Implement a baseline algorithm to compute the derivatives of NLPP.
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6180 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2014-01-22 15:05:46 +00:00
Cynthia Gu
8e48bb6583
fix filename for adios verification
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6176 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2014-01-21 20:11:34 +00:00
Jeongnim Kim
356adb9dbc
Remove d_table in J1, J2 and eeI, and use table index, myTableIndex for
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one-body type. For the two-body type, always 0.
git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6171 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2014-01-15 18:33:47 +00:00
Cynthia Gu
bc4b4d4019
add adiosinit label in xml
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6167 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2014-01-14 16:33:25 +00:00
Cynthia Gu
350d49325e
add adiosinit label in xml
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6166 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2014-01-14 16:32:51 +00:00
Jeongnim Kim
41ba1b44c9
Fix cg optimization.
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6162 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2014-01-14 14:27:40 +00:00
Jaron Krogel
f5ffcab86f
update HEG for sposet_builder compatibility
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6160 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2014-01-13 20:55:24 +00:00
Cynthia Gu
c239ef67bb
change adios trace file names
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6159 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2014-01-13 19:52:55 +00:00
Jeongnim Kim
7d4948c0bb
Add determinant attributes to utilize sposet and group in addition to the existing one.
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- id = name of the determinant
- sposet = name of the sposet associated with the determinant
- group = electron group name, u or d
Deprecated attributes
- spin : replaced by group
git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6158 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2014-01-13 18:39:43 +00:00
Cynthia Gu
d5dbf191da
change adios file name
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6157 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2014-01-13 18:37:14 +00:00
Cynthia Gu
681179a31c
change adios file name
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6156 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2014-01-13 18:36:47 +00:00
Cynthia Gu
bb2ef1c721
change file name
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6155 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2014-01-13 18:36:22 +00:00
Cynthia Gu
c1d54c18ba
fix checkpoint verification
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6154 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2014-01-09 17:38:15 +00:00
Cynthia Gu
e05b31387e
fix checkpoint
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6153 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2014-01-09 17:24:34 +00:00
Cynthia Gu
130ee2a7fa
fix checkpoint
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6152 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2014-01-09 17:24:06 +00:00
Cynthia Gu
8bc5f117ef
fix format
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6151 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2014-01-08 17:55:10 +00:00
Cynthia Gu
c733b76b49
fix format
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6150 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2014-01-08 17:54:57 +00:00
Cynthia Gu
3ffcb3c061
fix link error
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6149 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2014-01-08 17:53:21 +00:00
Cynthia Gu
4680620f8b
Change due to the update in adios from 1.5 to 1.6
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6144 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2014-01-07 18:19:13 +00:00
Jeongnim Kim
c994dffb93
Fix the step overwrite.
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6142 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2014-01-07 15:22:11 +00:00
Cynthia Gu
db80988cdf
Change MACRO for consistency
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6133 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2013-12-19 15:13:30 +00:00
Jeongnim Kim
8abeaea5bc
Fix adios_profile flags.
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6125 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2013-12-17 18:41:33 +00:00
Jeongnim Kim
00b8a3d3e1
Remove itself in the includes.
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6124 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2013-12-17 14:35:05 +00:00
Cynthia Gu
957bfc006e
change local variable from stack to heap
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6119 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2013-12-11 15:56:30 +00:00
Cynthia Gu
ce81ebc441
change xml label
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6112 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2013-12-09 16:24:16 +00:00
Jeongnim Kim
3f9784f1fd
Fix doxygen bug.
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6104 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2013-12-07 19:11:36 +00:00
Cynthia Gu
a618f3564c
Change for adios trace
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6103 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2013-12-04 19:02:37 +00:00
Jeongnim Kim
a7c04319ba
Remove c++11 (got carried away).
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6102 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2013-12-04 16:50:00 +00:00
Jeongnim Kim
6ca6dda03e
Update einspline reader to print out BandInfo for the pre/post processing. Prepare composite SPOs.
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6101 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2013-12-04 16:47:20 +00:00
Jeongnim Kim
01fba83a4a
Fix restart. Use boost::property_tree if available. Remove adios read/write for qmc state and random number generator.
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6100 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2013-12-04 16:42:14 +00:00
Jeongnim Kim
d8b5de914a
More cleanup with profile.
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6099 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2013-12-04 00:17:14 +00:00
Jeongnim Kim
bf28a34475
Add Profile class to call profiler, Tau and Vampir.
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6098 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2013-12-03 19:51:54 +00:00
Cynthia Gu
48f7d75df9
Fix compilation error for ADIOS
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6096 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2013-12-02 19:50:30 +00:00
Cynthia Gu
695fbdb30e
Fix compilation error for ADIOS
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6095 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2013-12-02 19:49:37 +00:00
Jeongnim Kim
f40cb165f8
Compute the walker distribution before initialization walker controller.
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6094 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2013-12-02 18:51:52 +00:00
Jeongnim Kim
c1c555cb5d
Reformat and use the size change to add to the operator_types[potName]=potType
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6092 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2013-12-02 17:21:55 +00:00
Jeongnim Kim
564a4cf8f1
Ignore comment.
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6091 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2013-12-02 16:38:39 +00:00
Jeongnim Kim
d2b1102629
Bugfixes with hdf5 restart. Add functions to avoid uisng ADIOS macros.
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PHDF5 is behaving strange and is completely disabled.
git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6089 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2013-11-30 14:27:05 +00:00
Jeongnim Kim
70b37176dc
Cleanup with MPC and MPC_CUDA. Remove CUDA compiler guards in
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QMCHamiltonianBase and QMCHamiltonian to enable mixing CPU and GPU
implementations.
MPC_CUDA.cpp uses CPU for the long-range part.
git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6088 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2013-11-30 14:22:52 +00:00
Jeongnim Kim
1ad9745036
Add a test.
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6087 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2013-11-29 20:04:13 +00:00
Jeongnim Kim
d31a0ba60c
Add mpi_groups (int) in qmc_common to control output.
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6086 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2013-11-29 17:37:01 +00:00
Jeongnim Kim
a53214c69c
Add io_node (bool) to supress output of temporary *.dat files for PP, J1 and J2.
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6085 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2013-11-29 17:31:31 +00:00
Jeongnim Kim
6eb3c4b022
Put input positions into [0,1) for periodic systems.
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6084 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2013-11-27 21:50:03 +00:00
Jaron Krogel
1d9a8050d6
add missing files
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6080 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2013-11-25 18:26:42 +00:00
Jaron Krogel
99f86bc506
spin density estimators and postprocessing
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6079 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2013-11-25 17:57:32 +00:00
Jeongnim Kim
2a1b4067fb
Add CompositeSPOSetBuilder and fix bug fix in makeClone.
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To use composite spo, create multiple <sposet/> and use them them.
<sposet_builder type="bspline"
href="../lda.pwscf.h5" sort="1" tilematrix="3 0 0 0 3 0 0 0 1"
twistnum="0" source="ion0" version="0.10" gpu="yes" precision="float" truncate="yes">
<!-- create two sposet instead of one for 72 orbitals -->
<sposet type="bspline" name="spo0" size="36" group="0"/>
<sposet type="bspline" name="spo1" index_min="36" index_max="72" group="0"/>
</sposet_builder>
<sposet_builder type="composite">
<sposet name="spo-up" size="72">spo0 spo1</sposet> <!-- list the sposet@name created -->
</sposet_builder>
<determinantset>
<slaterdeterminant>
<determinant id="spo-up" group="u" size="72"/> <!-- determinant uses spo-up -->
<determinant id="spo-up" group="d" size="72"/>
</slaterdeterminant>
</determinantset>
git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6073 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2013-11-18 18:51:05 +00:00
Jeongnim Kim
c87fc5aef8
Add myName for the *.bandinfo.dat and stored bspline tables.
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A table describing the bandstructure of ESHDF is printed out, e.g.,
einspline.tile_100010001.spin_0.tw_0.g0.bandinfo.dat
The columns denote
# Band State TwistIndex BandIndex Energy Kx Ky Kz K1 K2 K3 HalfG
git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6072 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2013-11-18 18:44:33 +00:00
Jeongnim Kim
756d023564
Implement evaluate_notranspose for vgl and vgh
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Add component_offsets to remove += in the loop for parallelization.
git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6070 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2013-11-15 15:52:26 +00:00
Jeongnim Kim
752eaf68cc
Remove unnecessary data member and allow derived classes to handle what is needed.
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6069 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2013-11-14 21:57:05 +00:00
Jeongnim Kim
589019b9d2
Remove evaluate functions handled by the base class.
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6068 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2013-11-14 21:56:16 +00:00
Jeongnim Kim
fd338279f6
Rename BasisSetBase.cpp as BasisSetBuilder.cpp
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6067 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2013-11-14 20:20:31 +00:00
Luke Shulenburger
4323120768
Change to allow minimumtargetwalkers for dmc
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6066 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2013-11-14 17:03:31 +00:00
Jaron Krogel
f4b224417f
update to createSPOSet interface
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6065 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2013-11-14 15:19:55 +00:00
Jeongnim Kim
dee7418917
Fix the return value of makeClone.
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6064 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2013-11-13 18:08:06 +00:00
Luke Shulenburger
98426b83d9
Children should not play with power tools
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6063 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2013-11-13 17:32:57 +00:00
Luke Shulenburger
a28fb5cf9e
Move several statements about supercell (k-vectors and ion positions) into app_log()
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6062 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2013-11-13 17:31:18 +00:00
Jeongnim Kim
bb6e23eb99
Bug fix with the samples.
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6061 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2013-11-12 17:21:59 +00:00
Jeongnim Kim
a1526c31a1
Add minimumsamples/minimumtargetwalkers to overwrite samples and
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samplesperthred if it is a positive integer and it is larger than samples.
git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6060 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2013-11-12 15:20:31 +00:00
Jaron Krogel
f92954d9fd
BasisSetBuilders can carry state information about many orbital groups (e.g. spin resolved)
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6059 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2013-11-11 19:07:31 +00:00
Jeongnim Kim
4f6b31dbcc
Move map<string,BasisSetBuilder*> basis_builders inside BasisSetFactory
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Make last_builder static to reuse the last BasisSetBuilder if the name of the sposet_builder is not given.
Introduce sposet_builder and its usage is
<wavefunction name="psi0" target="e">
<!-- create BasisSetBuilder using sposet_builder@type
separate SPOSet instantiations from determinant
any number of sposet can be defined and will be instantiated
-->
<sposet_builder type="einspline" href="pwscf.h5" tilematrix="1 0 0 0 1 0 0 0 1"
twistnum="0" meshfactor="1.0" gpu="no" precision="single">
<sposet name="updet" size="13" spindataset="0"/>
<sposet name="downdet" size="12" spindataset="1"/>
</sposet_builder>
<determinantset>
<determinant sposet="updet" size="13" spindataset="0"/>
<determinant sposet="downdet" size="12" spindataset="1"/>
</determinantset>
<jastrow/>
<jastrow/>
</wavefunction>
<sposet/> can have children nodes to specify what single-particle states to be used either in the energy order
or band order, e.g.,
<sposet name="updet" size="13">
<occupation mode="ground" spindataset="0"/>
</sposet>
Existing inputs for molecular orbitals and einspline orbitals are valid.
git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6058 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2013-11-08 18:05:03 +00:00
Jeongnim Kim
829d8f5958
Check <sposet_builder/> and <determinantset/> to initialize the ionic and electronic systems when they are not explicitly defined.
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6057 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2013-11-08 17:52:01 +00:00
Jeongnim Kim
ba6a226aa0
Fix with cuda to handle multiple blocks. Reconfiguration does not use branchinterval with CUDA.
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6056 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2013-11-08 17:13:11 +00:00
Jeongnim Kim
2bd0f9e393
Initialize m_context=NULL with the old constructor.
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6055 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2013-11-07 18:29:51 +00:00
Jeongnim Kim
c5a6c2f4d2
Add OhmmsXPathObject constructor that can be used with the current xml node.
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It is expensive and don't abuse it.
OhmmsXPathObject det("//determinant",cur);
git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6054 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2013-11-07 17:27:49 +00:00
Jeongnim Kim
709fe7329a
Einspline adoptors and their readers are modified to create any set of SPOSet from the full set.
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6053 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2013-11-06 21:01:33 +00:00
Jaron Krogel
8b435f0df8
SPOSetInfo enum name typo fix
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6052 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2013-11-06 17:52:31 +00:00
Jaron Krogel
adca8d2f57
Changes to how BasisSetBuilders and SPOSets are created and accessed. Also includes implementation of SHO (Spherical Harmonic Oscillator) in SPOSets and Hamiltonian. Unit conversion facilities are now available.
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Changes to BasisSetBuilders and SPOSet creation:
-BasisSetFactory now only creates one builder of each type
-the BasisSetBuilder of a given type can be accessed through a global map
-a BasisSetBuilder and several SPOSets can now be created with the xml input:
<wavefunction name="psi0" target="e">
<sposet_collection type="sho">
<sposet name="normal" size="10" mass="1.0" frequency="1.0"/>
<sposet name="low" size="20" mass="1.0" frequency="0.1"/>
<sposet name="high" size="30" mass="1.0" frequency="10.0"/>
</sposet_collection>
</wavefunction>
-SPOSets created in this way must share the same type
-any SPOSet can be accessed by name through the global get_sposet() function
-each BasisSetBuilder has a "states" member that has information about all available basis states
-information includes index, energy, and energetic degeneracy of the state
-where supported, SPOSets can be made from arbitrary subsets of basis states
-subset requests can take the form of index ranges, occupations, index sets,
energy cutoffs, energy ranges, or energy sets
-example syntax is given below:
<sposet_collection type="spo">
<sposet name="normal" size="7"/>
<sposet name="index_range" index_min="7" index_max="10"/>
<sposet name="occupation" occ="111110100010000"/>
<sposet name="index_set">
<indices>
5 8 13 19 33
</indices>
</sposet>
<sposet name="ecut" ecut="30" units="Ry"/>
<sposet name="energy_range" energy_min="-3.0" energy_max="26.0" units="Ha"/>
<sposet name="energy_set">
<energies units="eV" matching_tol="1e-6">
1.3 3.6 5.0 7.9
</energies>
</sposet>
</sposet_collection>
Using Spherical Harmonic Oscillator
-example input xml for SHO
<wavefunction name="psi0" target="e">
<determinantset type="sho">
<sposet type="sho" name="spo-up" size="7" mass="1.0" frequency="0.2"/>
<slaterdeterminant>
<determinant id="spo-up" size="7" spindataset="0"/>
<determinant id="spo-up" size="7" spindataset="1"/>
</slaterdeterminant>
</determinantset>
</wavefunction>
<hamiltonian name="h0" type="generic" target="e">
<extpot type="harmonic_ext" mass="1.0" frequency="0.2"/>
</hamiltonian>
Unit conversion facilities
-contained in Utilities/unit_conversion.*
-can convert units of scalars and vectors
-use the units enum, convert(), and convert_array() functions
-conversion examples:
convert(value,eV,Ha); // convert from electron-volt to Hartree
convert_array(my_vector,A,B); // convert from Angstrom to Bohr
// eV,Ha,A,B and others are in the units enum
git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6051 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2013-11-06 17:22:32 +00:00
Miguel Morales
f39d17c5fb
fixed small error
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6050 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2013-11-04 23:30:21 +00:00
Miguel Morales
8cfddc40e5
added 3BodyJ (-add3BodyJ) and numMO (-numMO XXXX) tags to converter
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6049 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2013-11-04 23:25:29 +00:00
Cynthia Gu
728289c524
reverse changes for io profile macro in DMC
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6048 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2013-11-01 22:25:24 +00:00
Cynthia Gu
a5428fbd24
Avoid redundant memory copy for multiple checkpointing IO
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6047 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2013-11-01 22:04:03 +00:00
Cynthia Gu
f380377b63
Partial fix to remove redundant mem copy when multi io methods are available.
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6046 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2013-11-01 06:54:01 +00:00
Jeongnim Kim
c16f19b2f2
Fix memory leak with HDFWalkerOutput and APP_ABORT_TRACE to report file/line where fatal errors occur.
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Usage,
APP_ABORT_TRACE(__FILE__, __LINE__, "YOUR MESSAGE");
git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6045 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2013-10-31 20:19:07 +00:00
Jeongnim Kim
c07498ebb3
Set qmc_counter=0 before entering loop.
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6044 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2013-10-31 17:16:01 +00:00
Cynthia Gu
302ac13cca
adios restart walkers rewrite
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6043 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2013-10-30 19:19:23 +00:00
Cynthia Gu
302cb98fee
Adios restart walker_num rewrite
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6042 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2013-10-30 17:58:33 +00:00
Cynthia Gu
00e1ed91d4
change Walkers Adios read to be complied to h5 read
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6039 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2013-10-29 07:12:39 +00:00
Cynthia Gu
6a9a9ea0e1
fix problem when writing both bp and h5 files
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6038 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2013-10-29 05:51:21 +00:00
Cynthia Gu
c00a9b70a6
uncomment random number read with adios.
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fix error msg in HDFWalkerOutput
git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6037 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2013-10-29 04:04:12 +00:00
Cynthia Gu
bf1ebe44c5
remove #define for io profile in DMC and VMC
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tested on sith w/ and w/o HAVE_ADIOS
git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6036 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2013-10-28 21:16:38 +00:00
Jeongnim Kim
e972bd8af3
Changes to support changing samples and targetwalkers between qmc sections.
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* Use put function of VMC and DMC to initialize the parameters.
* QMCDriver::put only creates the walkers and do not set any other parameters.
* Optimizers set IsQMCDriver=false
git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6035 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2013-10-28 14:34:33 +00:00
Jeongnim Kim
c130a9e261
Add MyMethod=0 for the fluctuating pop and 1 for fixed population (reconfiguration="yes")
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and modify WalkerReconfiguration to adapt to the changing targetwalkers.
git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6034 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2013-10-28 14:23:38 +00:00
Jeongnim Kim
e5cc32b830
Missing header without ADIOS.
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git-svn-id: https://subversion.assembla.com/svn/qmcdev/trunk@6033 e5b18d87-469d-4833-9cc0-8cdfa06e9491
2013-10-28 13:21:30 +00:00