mirror of https://github.com/phonopy/phonopy.git
Add setup script for memory sanitizer
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parent
549d5b5a0e
commit
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import sys
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del_i = []
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for i, p in enumerate(sys.path):
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if 'dist-packages' in p:
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del_i.append(i)
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if 'local' in p:
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del_i.append(i)
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for i in del_i:
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del sys.path[i]
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import numpy
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import os
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try:
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from setuptools import setup, Extension
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use_setuptools = True
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print("setuptools is used.")
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except ImportError:
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from distutils.core import setup, Extension
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use_setuptools = False
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print("distutils is used.")
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include_dirs_numpy = [numpy.get_include()]
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cc = None
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if 'CC' in os.environ:
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if 'clang' in os.environ['CC']:
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cc = 'clang'
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if 'gcc' in os.environ['CC']:
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cc = 'gcc'
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# Workaround Python issue 21121
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import sysconfig
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config_var = sysconfig.get_config_var("CFLAGS")
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if config_var is not None and "-Werror=declaration-after-statement" in config_var:
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os.environ['CFLAGS'] = config_var.replace(
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"-Werror=declaration-after-statement", "")
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######################
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# _phonopy extension #
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######################
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include_dirs_phonopy = ['c/harmonic_h', 'c/kspclib_h'] + include_dirs_numpy
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sources_phonopy = ['c/_phonopy.c',
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'c/harmonic/dynmat.c',
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'c/harmonic/derivative_dynmat.c',
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'c/kspclib/kgrid.c',
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'c/kspclib/tetrahedron_method.c']
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if __name__ == '__main__':
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extra_compile_args_phonopy = []
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extra_link_args_phonopy = []
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else:
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extra_compile_args_phonopy = ['-fopenmp',]
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if cc == 'gcc':
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extra_link_args_phonopy = ['-lgomp',]
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elif cc == 'clang':
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extra_link_args_phonopy = []
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else:
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extra_link_args_phonopy = ['-lgomp',]
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extension_phonopy = Extension(
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'phonopy._phonopy',
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extra_compile_args=extra_compile_args_phonopy,
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extra_link_args=extra_link_args_phonopy,
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include_dirs=include_dirs_phonopy,
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sources=sources_phonopy)
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#####################
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# _spglib extension #
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#####################
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if __name__ == '__main__':
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extra_compile_args_spglib=[]
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extra_link_args_spglib=[]
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else:
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extra_compile_args_spglib=['-fopenmp',]
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if cc == 'gcc':
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extra_link_args_spglib=['-lgomp',]
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elif cc == 'clang':
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extra_link_args_spglib=[]
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else:
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extra_link_args_spglib=['-lgomp',]
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extension_spglib = Extension(
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'phonopy._spglib',
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include_dirs=['c/spglib_h'] + include_dirs_numpy,
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extra_compile_args=extra_compile_args_spglib,
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extra_link_args=extra_link_args_spglib,
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sources=['c/_spglib.c',
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'c/spglib/arithmetic.c',
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'c/spglib/cell.c',
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'c/spglib/delaunay.c',
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'c/spglib/hall_symbol.c',
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'c/spglib/kgrid.c',
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'c/spglib/kpoint.c',
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'c/spglib/mathfunc.c',
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'c/spglib/niggli.c',
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'c/spglib/pointgroup.c',
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'c/spglib/primitive.c',
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'c/spglib/refinement.c',
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'c/spglib/sitesym_database.c',
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'c/spglib/site_symmetry.c',
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'c/spglib/spacegroup.c',
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'c/spglib/spg_database.c',
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'c/spglib/spglib.c',
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'c/spglib/spin.c',
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'c/spglib/symmetry.c'])
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ext_modules_phonopy = [extension_phonopy, extension_spglib]
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packages_phonopy = ['phonopy',
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'phonopy.cui',
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'phonopy.gruneisen',
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'phonopy.harmonic',
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'phonopy.interface',
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'phonopy.phonon',
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'phonopy.qha',
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'phonopy.spectrum',
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'phonopy.structure',
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'phonopy.unfolding']
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scripts_phonopy = ['scripts/phonopy',
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'scripts/phonopy-qha',
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'scripts/phonopy-FHI-aims',
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'scripts/bandplot',
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'scripts/outcar-born',
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'scripts/propplot',
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'scripts/tdplot',
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'scripts/dispmanager',
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'scripts/gruneisen',
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'scripts/pdosplot']
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if __name__ == '__main__':
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version_nums = [None, None, None]
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with open("phonopy/version.py") as w:
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for line in w:
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if "__version__" in line:
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for i, num in enumerate(line.split()[2].strip('\"').split('.')):
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version_nums[i] = int(num)
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# To deploy to pypi/conda by travis-CI
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if os.path.isfile("__nanoversion__.txt"):
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with open('__nanoversion__.txt') as nv:
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try :
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for line in nv:
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nanoversion = int(line.strip())
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break
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except ValueError :
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nanoversion = 0
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if nanoversion:
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version_nums.append(nanoversion)
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if None in version_nums:
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print("Failed to get version number in setup.py.")
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raise
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version_number = ".".join(["%d" % n for n in version_nums])
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if use_setuptools:
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setup(name='phonopy',
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version=version_number,
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description='This is the phonopy module.',
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author='Atsushi Togo',
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author_email='atz.togo@gmail.com',
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url='http://atztogo.github.io/phonopy/',
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packages=packages_phonopy,
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install_requires=['numpy', 'PyYAML', 'matplotlib', 'h5py'],
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provides=['phonopy'],
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scripts=scripts_phonopy,
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ext_modules=ext_modules_phonopy)
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else:
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setup(name='phonopy',
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version=version_number,
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description='This is the phonopy module.',
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author='Atsushi Togo',
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author_email='atz.togo@gmail.com',
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url='http://atztogo.github.io/phonopy/',
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packages=packages_phonopy,
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requires=['numpy', 'PyYAML', 'matplotlib', 'h5py'],
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provides=['phonopy'],
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scripts=scripts_phonopy,
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ext_modules=ext_modules_phonopy)
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