Dockerfile with minimal env needed for training
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ARG IMAGE_NAME=nvcr.io/nvidia/pytorch:21.06-py3
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FROM ${IMAGE_NAME} AS base
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ENV DEBIAN_FRONTEND=noninteractive
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COPY . /workspace/openfold
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WORKDIR /workspace/openfold
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RUN pip install -r requirements_minimal.txt
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RUN python setup.py install
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biopython==1.79
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deepspeed==0.5.3
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dm-tree==0.1.6
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ml-collections==0.1.0
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ninja==1.10.2
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tensorboardX==1.8
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triton==1.0.0
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git+https://github.com/PyTorchLightning/pytorch-lightning.git@6d79184ec50d9f80448013cc2c01b5b744a70b44
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