Pare down notebook requirements

notebooks/environment.yml

@@ -3,11 +3,8 @@ channels:
   - conda-forge
   - bioconda
 dependencies:
-  - conda-forge::setuptools=59.5.0
-  - conda-forge::pip
   - conda-forge::openmm=7.5.1
   - conda-forge::pdbfixer
-  - conda-forge::cudatoolkit==11.3.*
   - bioconda::hmmer==3.3.2
   - bioconda::hhsuite==3.3.0
   - bioconda::kalign2==2.04
@@ -15,9 +12,6 @@ dependencies:
       - biopython==1.79
       - dm-tree==0.1.6
       - ml-collections==0.1.0
-      - numpy==1.21.2
       - PyYAML==5.4.1
       - requests==2.26.0
-      - scipy==1.7.1
-      - tqdm==4.62.2
       - typing-extensions==3.10.0.2