Update environment YAML
This commit is contained in:
parent
2300f6720d
commit
6bf5c8cea1
|
@ -2,30 +2,30 @@ name: openfold_venv
|
|||
channels:
|
||||
- conda-forge
|
||||
- bioconda
|
||||
- pytorch
|
||||
dependencies:
|
||||
- conda-forge::python=3.9
|
||||
- conda-forge::setuptools=59.5.0
|
||||
- conda-forge::pip
|
||||
- conda-forge::openmm=7.5.1
|
||||
- conda-forge::pdbfixer
|
||||
- conda-forge::cudatoolkit==11.3.*
|
||||
- python=3.9
|
||||
- setuptools=59.5.0
|
||||
- pip
|
||||
- openmm=7.7
|
||||
- pdbfixer
|
||||
- cudatoolkit==11.3.*
|
||||
- pytorch=1.12.*
|
||||
- pytorch_lightning==1.5.10
|
||||
- biopython==1.79
|
||||
- numpy==1.21
|
||||
- PyYAML==5.4.1
|
||||
- requests
|
||||
- scipy==1.7
|
||||
- tqdm==4.62.2
|
||||
- typing-extensions==3.10
|
||||
- wandb==0.12.21
|
||||
- modelcif==0.7
|
||||
- bioconda::hmmer==3.3.2
|
||||
- bioconda::hhsuite==3.3.0
|
||||
- bioconda::kalign2==2.04
|
||||
- pytorch::pytorch=1.12.*
|
||||
- pip:
|
||||
- biopython==1.79
|
||||
- deepspeed==0.5.10
|
||||
- dm-tree==0.1.6
|
||||
- ml-collections==0.1.0
|
||||
- numpy==1.21.2
|
||||
- PyYAML==5.4.1
|
||||
- requests==2.26.0
|
||||
- scipy==1.7.1
|
||||
- tqdm==4.62.2
|
||||
- typing-extensions==3.10.0.2
|
||||
- pytorch_lightning==1.5.10
|
||||
- wandb==0.12.21
|
||||
- modelcif==0.7
|
||||
- deepspeed==0.5.10 # can this be updated?
|
||||
- dm-tree==0.1.6 # 0.1.6 yanked from conda-forge - update?
|
||||
- ml-collections==0.1.0 # 0.1.1 is oldest available on conda-forge - update?
|
||||
- git+https://github.com/NVIDIA/dllogger.git
|
||||
- git+https://github.com/Dao-AILab/flash-attention.git@5b838a8bef
|
||||
|
|
Loading…
Reference in New Issue