Delete Dockerfile
This commit is contained in:
parent
52800ff027
commit
4ff033db1b
24
Dockerfile
24
Dockerfile
|
@ -1,24 +0,0 @@
|
||||||
ARG IMAGE_NAME=nvcr.io/nvidia/pytorch:21.06-py3
|
|
||||||
|
|
||||||
FROM ${IMAGE_NAME} AS base
|
|
||||||
ENV DEBIAN_FRONTEND=noninteractive
|
|
||||||
|
|
||||||
RUN apt update && \
|
|
||||||
apt install -y aria2
|
|
||||||
|
|
||||||
COPY . /workspace/openfold
|
|
||||||
WORKDIR /workspace/openfold
|
|
||||||
|
|
||||||
RUN pip install -r requirements.txt
|
|
||||||
RUN python setup.py install
|
|
||||||
|
|
||||||
# TODO add all dependencies needed for inference
|
|
||||||
|
|
||||||
RUN wget -q -P openfold/resources \
|
|
||||||
https://git.scicore.unibas.ch/schwede/openstructure/-/raw/7102c63615b64735c4941278d92b554ec94415f8/modules/mol/alg/src/stereo_chemical_props.txt && \
|
|
||||||
mkdir -p tests/test_data/alphafold/common && \
|
|
||||||
ln -rs openfold/resources/stereo_chemical_props.txt tests/test_data/alphafold/common
|
|
||||||
|
|
||||||
RUN scripts/download_alphafold_params.sh openfold/resources
|
|
||||||
|
|
||||||
RUN gunzip tests/test_data/sample_feats.pickle.gz
|
|
Loading…
Reference in New Issue