From 163be189de3b4f84103febd2817f2e3a22409e8d Mon Sep 17 00:00:00 2001 From: mori Date: Sun, 11 Jun 2017 17:43:13 +0900 Subject: [PATCH] add atom viewer --- docs/source/usage/project/atoms_viewer.rst | 81 +++++++++------------- docs/source/usage/project/create.rst | 7 +- docs/source/usage/web_browser.rst | 4 +- 3 files changed, 39 insertions(+), 53 deletions(-) diff --git a/docs/source/usage/project/atoms_viewer.rst b/docs/source/usage/project/atoms_viewer.rst index 503c479..d08dae8 100644 --- a/docs/source/usage/project/atoms_viewer.rst +++ b/docs/source/usage/project/atoms_viewer.rst @@ -1,105 +1,90 @@ Atoms Viewer ============ -BURAI platform can replace, delete, move, and add the atom. -This chapter explain these operations. +Project tab has the atoms viewer, which can edit atoms in the model. +It has the following operations. -Replace Atom +Rename Atom ------------ -In case users replace the atom to other element, -The first step is selecting the atom which users want to replace. -Then, the menu appears with right click. users select “Rename selected atoms” +You can rename an atom to another atom. +The first step is selecting the atom with right click. +Then, you select “Rename selected atoms” from menu. .. image:: ../../../img/projects/imgCreateJob_ReplaceAtom01.png :scale: 30 % - :align: center - -The periodic table appears, and users select element that users want to replace. + :align: left .. image:: ../../../img/projects/imgCreateJob_ReplaceAtom02.png :scale: 30 % - :align: center - -users can replace the atom. + :align: left .. image:: ../../../img/projects/imgCreateJob_ReplaceAtom03.png :scale: 30 % - :align: center - + :align: left +| Delete Atom ----------- -We introduce the operation of delete the atom. -The first step is selecting the atom which users want to delete. -Then, the menu appears. users select “Delete selected atoms” +You can delete an atom. +The first step is selecting the atom with right click. +Then, you select “Delete selected atoms” from menu. .. image:: ../../../img/projects/imgCreateJob_DeleteAtom00.png :scale: 30 % - :align: center - -The confirmation screen appears. + :align: left .. image:: ../../../img/projects/imgCreateJob_DeleteAtom01.png :scale: 30 % - :align: center - -users select “OK”, and users can delete the atom. + :align: left .. image:: ../../../img/projects/imgCreateJob_DeleteAtom02.png :scale: 30 % - :align: center + :align: left +| Move Atom --------- -We explain the operation that users move the selected atom in the model. -The first step is selecting the atom that users want to move. -Then, the menu appears with right click. Users select “Move selected atoms” - +You can move an atom. +The first step is selecting the atom with right click. +Then, you select “Move selected atoms” from menu. .. image:: ../../../img/projects/imgCreateJob_MoveAtom00.png :scale: 30 % - :align: center - -The green plane surface appears on the model. The plane surface means the area that the selected atom can move. + :align: left .. image:: ../../../img/projects/imgCreateJob_MoveAtom01.png :scale: 30 % - :align: center - -Users decide the area, and users move the atom. + :align: left .. image:: ../../../img/projects/imgCreateJob_MoveAtom02.png :scale: 30 % - :align: center + :align: left .. image:: ../../../img/projects/imgCreateJob_MoveAtom03.png :scale: 30 % - :align: center + :align: left + +| - -Add Atom +Put Atom -------- -We introduce the operation of put the atom. -The first step is clicking the area which users want to put the atom, then menu window appears with right click. -Users select “Put an atom” +You can put an atom. +The first step is selecting the atom with right click. +Then, you select Put an atom” from menu. .. image:: ../../../img/projects/imgCreateJob_PutAtom00.png :scale: 30 % - :align: center - -The periodic table appears, and users select element which users want to add in the area. + :align: left .. image:: ../../../img/projects/imgCreateJob_PutAtom01.png :scale: 30 % - :align: center - -After users select the element, users can put the atom. + :align: left .. image:: ../../../img/projects/imgCreateJob_PutAtom02.png :scale: 30 % - :align: center + :align: left diff --git a/docs/source/usage/project/create.rst b/docs/source/usage/project/create.rst index a39e7a9..13a279a 100644 --- a/docs/source/usage/project/create.rst +++ b/docs/source/usage/project/create.rst @@ -1,9 +1,8 @@ Creating Project ================ -Users select the calculation type in following menu to create a Quantum ESPRESSO project. +Clicking the 3D model in the explorer open a new tab. +The tab contains a QE project. +add zu -.. image:: ../../../img/input_editor/imgCreateJob_menu.png - :scale: 40 % - :align: center \ No newline at end of file diff --git a/docs/source/usage/web_browser.rst b/docs/source/usage/web_browser.rst index 110fb81..acb1104 100644 --- a/docs/source/usage/web_browser.rst +++ b/docs/source/usage/web_browser.rst @@ -8,13 +8,14 @@ if you want to search something at the internet, you should select "Web" from me :scale: 30 % :align: left +| Getting Crystal Structures -------------------------- This chapter illustrate to get the crystal structure from some web site. You search the crystal data from *build-in* web browser. Opening the link of the crystal structure pops up the window with 3D model. -Clicking the model shows the new project tub. +Clicking the model shows the new project tab. .. image:: ../../img/imgWeb_searchNaCl00.png :scale: 30 % @@ -28,6 +29,7 @@ Clicking the model shows the new project tub. :scale: 30 % :align: left +| Getting Pseudopotentials ------------------------