mirror of https://github.com/abinit/abipy.git
Add iref to get_energyterms_dataframe
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@ -500,16 +500,19 @@ class GsrRobot(Robot, RobotWithEbands):
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dataframe = pd.DataFrame(rows, index=index, columns=list(rows[0].keys()) if rows else None)
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return dict2namedtuple(fits=fits, dataframe=dataframe)
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def get_energyterms_dataframe(self, abspath=False):
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def get_energyterms_dataframe(self, iref=None, abspath=False):
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rows, row_names = [], []
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for label, gsr in self.items():
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row_names.append(label)
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rows.append(gsr.energy_terms)
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d = OrderedDict([("energy", gsr.energy)])
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d.update(gsr.energy_terms)
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rows.append(d)
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row_names = row_names if not abspath else self._to_relpaths(row_names)
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df = pd.DataFrame(rows, index=row_names, columns=list(rows[0].keys()))
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first_row = df.iloc[[0]].values[0]
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df = df.apply(lambda row: row - first_row, axis=1)
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if iref is not None:
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first_row = df.iloc[[iref]].values[0]
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df = df.apply(lambda row: row - first_row, axis=1)
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return df
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@add_fig_kwargs
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@ -543,6 +543,7 @@ def _invoke_robot(options):
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if options.ipython:
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import IPython
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robot.trim_paths()
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IPython.embed(header=repr(robot) + "\n\nType `robot` in the terminal and use <TAB> to list its methods",
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robot=robot)
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@ -550,6 +551,7 @@ def _invoke_robot(options):
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robot.make_and_open_notebook(foreground=options.foreground)
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else:
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robot.trim_paths()
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#df = robot.get_params_dataframe()
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#abilab.print_dataframe(df, title="Output of robot.get_params_dataframe():")
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