mirror of https://github.com/abinit/abinit.git
439 lines
22 KiB
Plaintext
439 lines
22 KiB
Plaintext
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.Version 10.1.4.5 of ABINIT, released Sep 2024.
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.(MPI version, prepared for a x86_64_linux_gnu13.2 computer)
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.Copyright (C) 1998-2025 ABINIT group .
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ABINIT comes with ABSOLUTELY NO WARRANTY.
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It is free software, and you are welcome to redistribute it
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under certain conditions (GNU General Public License,
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see ~abinit/COPYING or http://www.gnu.org/copyleft/gpl.txt).
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ABINIT is a project of the Universite Catholique de Louvain,
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Corning Inc. and other collaborators, see ~abinit/doc/developers/contributors.txt .
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Please read https://docs.abinit.org/theory/acknowledgments for suggested
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acknowledgments of the ABINIT effort.
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For more information, see https://www.abinit.org .
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.Starting date : Fri 13 Sep 2024.
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- ( at 19h09 )
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- input file -> /home/buildbot/ABINIT3/eos_gnu_13.2_mpich/trunk_merge-10.0/tests/TestBot_MPI1/v3_t93/t93.abi
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- output file -> t93.abo
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- root for input files -> t93i
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- root for output files -> t93o
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Symmetries : space group P1 (# 1); Bravais aP (primitive triclinic)
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================================================================================
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Values of the parameters that define the memory need of the present run
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intxc = 0 ionmov = 0 iscf = 7 lmnmax = 2
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lnmax = 2 mgfft = 16 mpssoang = 3 mqgrid = 3001
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natom = 2 nloc_mem = 1 nspden = 1 nspinor = 1
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nsppol = 1 nsym = 1 n1xccc = 0 ntypat = 1
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occopt = 1 xclevel = 1
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- mband = 4 mffmem = 1 mkmem = 4
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mpw = 69 nfft = 4096 nkpt = 4
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================================================================================
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P This job should need less than 1.598 Mbytes of memory.
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Rough estimation (10% accuracy) of disk space for files :
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_ WF disk file : 0.019 Mbytes ; DEN or POT disk file : 0.033 Mbytes.
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================================================================================
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--------------------------------------------------------------------------------
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------------- Echo of variables that govern the present computation ------------
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--------------------------------------------------------------------------------
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-
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- outvars: echo of selected default values
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- iomode0 = 0 , fftalg0 =512 , wfoptalg0 = 0
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-
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- outvars: echo of global parameters not present in the input file
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- max_nthreads = 0
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-
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-outvars: echo values of preprocessed input variables --------
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acell 1.0000000000E+01 1.0000000000E+01 1.0000000000E+01 Bohr
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amu 1.00000000E+00
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densty 1.10000000E+00
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diemac 1.50000000E+00
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ecut 1.20000000E+00 Hartree
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- fftalg 512
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ixc 3
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kpt 0.00000000E+00 0.00000000E+00 -3.75000000E-01
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0.00000000E+00 0.00000000E+00 -1.25000000E-01
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0.00000000E+00 0.00000000E+00 1.25000000E-01
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0.00000000E+00 0.00000000E+00 3.75000000E-01
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kptopt 0
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mixalch 0.00000000E+00 1.00000000E+00
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P mkmem 4
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natom 2
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nband 4
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ngfft 16 16 16
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nkpt 4
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npsp 2
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nsym 1
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ntypalch 1
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ntypat 1
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occ 2.000000 2.000000 2.000000 2.000000
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spgroup 1
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tolwfr 1.00000000E-22
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typat 1 1
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wtk 0.25000 0.25000 0.25000 0.25000
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xangst 0.0000000000E+00 0.0000000000E+00 -7.9376581289E-01
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0.0000000000E+00 0.0000000000E+00 7.9376581289E-01
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xcart 0.0000000000E+00 0.0000000000E+00 -1.5000000000E+00
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0.0000000000E+00 0.0000000000E+00 1.5000000000E+00
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xred 0.0000000000E+00 0.0000000000E+00 -1.5000000000E-01
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0.0000000000E+00 0.0000000000E+00 1.5000000000E-01
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ziontypat 4.00000000E+00
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znucl 32.00000 14.00000
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================================================================================
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chkinp: Checking input parameters for consistency.
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================================================================================
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== DATASET 1 ==================================================================
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- mpi_nproc: 1, omp_nthreads: -1 (-1 if OMP is not activated)
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--- !DatasetInfo
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iteration_state: {dtset: 1, }
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dimensions: {natom: 2, nkpt: 4, mband: 4, nsppol: 1, nspinor: 1, nspden: 1, mpw: 69, }
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cutoff_energies: {ecut: 1.2, pawecutdg: -1.0, }
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electrons: {nelect: 8.00000000E+00, charge: 0.00000000E+00, occopt: 1.00000000E+00, tsmear: 1.00000000E-02, }
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meta: {optdriver: 0, ionmov: 0, optcell: 0, iscf: 7, paral_kgb: 0, }
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...
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Exchange-correlation functional for the present dataset will be:
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LDA: old Teter (4/91) fit to Ceperley-Alder data - ixc=3
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Real(R)+Recip(G) space primitive vectors, cartesian coordinates (Bohr,Bohr^-1):
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R(1)= 10.0000000 0.0000000 0.0000000 G(1)= 0.1000000 0.0000000 0.0000000
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R(2)= 0.0000000 10.0000000 0.0000000 G(2)= 0.0000000 0.1000000 0.0000000
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R(3)= 0.0000000 0.0000000 10.0000000 G(3)= 0.0000000 0.0000000 0.1000000
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Unit cell volume ucvol= 1.0000000E+03 bohr^3
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Angles (23,13,12)= 9.00000000E+01 9.00000000E+01 9.00000000E+01 degrees
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getcut: wavevector= 0.0000 0.0000 0.0000 ngfft= 16 16 16
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ecut(hartree)= 1.200 => boxcut(ratio)= 3.24462
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getcut : COMMENT -
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Note that boxcut > 2.2 ; recall that boxcut=Gcut(box)/Gcut(sphere) = 2
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is sufficient for exact treatment of convolution.
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Such a large boxcut is a waste : you could raise ecut
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e.g. ecut= 3.158273 Hartrees makes boxcut=2
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--- Pseudopotential description ------------------------------------------------
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- pspini: atom type 1 psp file is /home/buildbot/ABINIT3/eos_gnu_13.2_mpich/trunk_merge-10.0/tests/Pspdir/32ge.SJ_mod
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- pspatm: opening atomic psp file /home/buildbot/ABINIT3/eos_gnu_13.2_mpich/trunk_merge-10.0/tests/Pspdir/32ge.SJ_mod
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- Starkloff-Joannopoulos local psp ( !!! OLD : only for tests)
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- 32.00000 4.00000 900101 znucl, zion, pspdat
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5 3 0 0 700 0.00000 pspcod,pspxc,lmax,lloc,mmax,r2well
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1.000000E-06 2.603367E-02 r1 and al (Hamman grid)
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0 0.000 0.000 0 1.0500000 l,e99.0,e99.9,nproj,rcpsp
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0.00000000 0.00000000 0.00000000 0.00000000 rms, ekb1, ekb2, epsatm
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0.00000000000000 0.00000000000000 0.00000000000000 rchrg,fchrg,qchrg
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Note: local psp for atom with Z= 32.0
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pspatm : epsatm= 27.96404307
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--- l ekb(1:nproj) -->
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pspatm: atomic psp has been read and splines computed
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- pspini: atom type 2 psp file is /home/buildbot/ABINIT3/eos_gnu_13.2_mpich/trunk_merge-10.0/tests/Pspdir/14si.Hamann_mod
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- pspatm: opening atomic psp file /home/buildbot/ABINIT3/eos_gnu_13.2_mpich/trunk_merge-10.0/tests/Pspdir/14si.Hamann_mod
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- Si psp produced from Hamann's atompp on 14 Feb 1990 ( !! OLD, for tests only )
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- 14.00000 4.00000 900214 znucl, zion, pspdat
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5 3 2 0 770 0.00000 pspcod,pspxc,lmax,lloc,mmax,r2well
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1.000000E-06 2.357045E-02 r1 and al (Hamman grid)
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0 0.000 0.000 0 1.0529960 l,e99.0,e99.9,nproj,rcpsp
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0.00000000 0.00000000 0.00000000 0.00000000 rms, ekb1, ekb2, epsatm
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1 0.000 0.000 1 1.2715070 l,e99.0,e99.9,nproj,rcpsp
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0.00000000 0.00000000 0.00000000 0.00000000 rms, ekb1, ekb2, epsatm
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2 0.000 0.000 1 1.2715070 l,e99.0,e99.9,nproj,rcpsp
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0.00000000 0.00000000 0.00000000 0.00000000 rms, ekb1, ekb2, epsatm
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0.00000000000000 0.00000000000000 0.00000000000000 rchrg,fchrg,qchrg
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pspatm : epsatm= 28.17357484
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--- l ekb(1:nproj) -->
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1 -2.083263
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2 -1.959803
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pspatm: atomic psp has been read and splines computed
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4.50777197E+02 ecore*ucvol(ha*bohr**3)
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--------------------------------------------------------------------------------
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_setup2: Arith. and geom. avg. npw (full set) are 67.000 66.970
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================================================================================
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--- !BeginCycle
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iteration_state: {dtset: 1, }
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solver: {iscf: 7, nstep: 30, nline: 4, wfoptalg: 0, }
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tolerances: {tolwfr: 1.00E-22, }
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...
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iter Etot(hartree) deltaE(h) residm vres2
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ETOT 1 -6.9150416124650 -6.915E+00 1.462E-03 6.218E+00
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ETOT 2 -6.9259777419405 -1.094E-02 7.500E-07 2.779E-01
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ETOT 3 -6.9267953259487 -8.176E-04 1.446E-05 3.310E-02
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ETOT 4 -6.9268557036702 -6.038E-05 8.075E-07 1.305E-03
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ETOT 5 -6.9268519666777 3.737E-06 2.125E-07 1.959E-03
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ETOT 6 -6.9268610958403 -9.129E-06 7.078E-08 3.072E-06
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ETOT 7 -6.9268611059422 -1.010E-08 7.956E-11 3.297E-08
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ETOT 8 -6.9268611061301 -1.878E-10 6.635E-12 1.990E-09
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ETOT 9 -6.9268611061406 -1.055E-11 2.688E-13 5.475E-11
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ETOT 10 -6.9268611061409 -2.842E-13 7.791E-15 6.099E-12
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ETOT 11 -6.9268611061410 -4.441E-14 5.155E-16 1.567E-13
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ETOT 12 -6.9268611061410 -7.105E-15 2.207E-17 1.513E-14
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ETOT 13 -6.9268611061410 1.510E-14 7.060E-19 6.377E-16
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ETOT 14 -6.9268611061409 7.105E-15 1.941E-20 6.243E-17
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ETOT 15 -6.9268611061410 -1.421E-14 6.543E-21 1.658E-18
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ETOT 16 -6.9268611061410 2.665E-15 2.105E-22 9.117E-20
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ETOT 17 -6.9268611061410 8.882E-16 9.270E-23 2.132E-20
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At SCF step 17 max residual= 9.27E-23 < tolwfr= 1.00E-22 =>converged.
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Cartesian components of stress tensor (hartree/bohr^3)
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sigma(1 1)= 4.20420711E-04 sigma(3 2)= 3.90582387E-15
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sigma(2 2)= 4.20420711E-04 sigma(3 1)= 0.00000000E+00
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sigma(3 3)= -1.72628098E-03 sigma(2 1)= 0.00000000E+00
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--- !ResultsGS
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iteration_state: {dtset: 1, }
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comment : Summary of ground state results
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lattice_vectors:
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- [ 10.0000000, 0.0000000, 0.0000000, ]
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- [ 0.0000000, 10.0000000, 0.0000000, ]
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- [ 0.0000000, 0.0000000, 10.0000000, ]
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lattice_lengths: [ 10.00000, 10.00000, 10.00000, ]
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lattice_angles: [ 90.000, 90.000, 90.000, ] # degrees, (23, 13, 12)
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lattice_volume: 1.0000000E+03
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convergence: {deltae: 8.882E-16, res2: 2.132E-20, residm: 9.270E-23, diffor: null, }
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etotal : -6.92686111E+00
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entropy : 0.00000000E+00
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fermie : -1.77958830E-01
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cartesian_stress_tensor: # hartree/bohr^3
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- [ 4.20420711E-04, 0.00000000E+00, 0.00000000E+00, ]
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- [ 0.00000000E+00, 4.20420711E-04, 3.90582387E-15, ]
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- [ 0.00000000E+00, 3.90582387E-15, -1.72628098E-03, ]
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pressure_GPa: 8.6835E+00
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xred :
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- [ 0.0000E+00, 0.0000E+00, -1.5000E-01, Ge]
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- [ 0.0000E+00, 0.0000E+00, 1.5000E-01, Ge]
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cartesian_forces: # hartree/bohr
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- [ -2.37673142E-13, -7.88033785E-13, -7.07065849E-01, ]
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- [ 2.37673142E-13, 7.88033785E-13, 7.07065849E-01, ]
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force_length_stats: {min: 7.07065849E-01, max: 7.07065849E-01, mean: 7.07065849E-01, }
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...
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Integrated electronic density in atomic spheres:
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------------------------------------------------
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Atom Sphere_radius Integrated_density
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1 2.00000 1.56048840
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2 2.00000 1.56048840
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================================================================================
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----iterations are completed or convergence reached----
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Mean square residual over all n,k,spin= 40.039E-24; max= 92.697E-24
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reduced coordinates (array xred) for 2 atoms
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0.000000000000 0.000000000000 -0.150000000000
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0.000000000000 0.000000000000 0.150000000000
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rms dE/dt= 4.0822E+00; max dE/dt= 7.0707E+00; dE/dt below (all hartree)
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1 0.000000000022 -0.000000000010 7.070658488319
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2 0.000000000017 -0.000000000026 -7.070658488278
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cartesian coordinates (angstrom) at end:
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1 0.00000000000000 0.00000000000000 -0.79376581288500
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2 0.00000000000000 0.00000000000000 0.79376581288500
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cartesian forces (hartree/bohr) at end:
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1 -0.00000000000024 -0.00000000000079 -0.70706584882986
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2 0.00000000000024 0.00000000000079 0.70706584882986
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frms,max,avg= 4.0822466E-01 7.0706585E-01 -1.938E-12 1.764E-12 -2.038E-12 h/b
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cartesian forces (eV/Angstrom) at end:
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1 -0.00000000001222 -0.00000000004052 -36.35878475959281
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2 0.00000000001222 0.00000000004052 36.35878475959281
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frms,max,avg= 2.0991754E+01 3.6358785E+01 -9.965E-11 9.072E-11 -1.048E-10 e/A
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length scales= 10.000000000000 10.000000000000 10.000000000000 bohr
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= 5.291772085900 5.291772085900 5.291772085900 angstroms
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prteigrs : about to open file t93o_EIG
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Fermi (or HOMO) energy (hartree) = -0.17796 Average Vxc (hartree)= -0.17262
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Eigenvalues (hartree) for nkpt= 4 k points:
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kpt# 1, nband= 4, wtk= 0.25000, kpt= 0.0000 0.0000 -0.3750 (reduced coord)
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-0.46574 -0.26054 -0.17796 -0.17796
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prteigrs : prtvol=0 or 1, do not print more k-points.
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--- !EnergyTerms
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iteration_state : {dtset: 1, }
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comment : Components of total free energy in Hartree
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kinetic : 2.53831572796743E+00
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hartree : 2.48837358075384E+00
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xc : -2.14467324355702E+00
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Ewald energy : -3.40312010772530E+00
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psp_core : 4.50777197418492E-01
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local_psp : -6.74889803429584E+00
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non_local_psp : -1.07636226702547E-01
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total_energy : -6.92686110614096E+00
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total_energy_eV : -1.88489476504106E+02
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band_energy : -2.13659508067780E+00
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...
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Cartesian components of stress tensor (hartree/bohr^3)
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sigma(1 1)= 4.20420711E-04 sigma(3 2)= 3.90582387E-15
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sigma(2 2)= 4.20420711E-04 sigma(3 1)= 0.00000000E+00
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sigma(3 3)= -1.72628098E-03 sigma(2 1)= 0.00000000E+00
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-Cartesian components of stress tensor (GPa) [Pressure= 8.6835E+00 GPa]
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- sigma(1 1)= 1.23692023E+01 sigma(3 2)= 1.14913286E-10
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- sigma(2 2)= 1.23692023E+01 sigma(3 1)= 0.00000000E+00
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- sigma(3 3)= -5.07889312E+01 sigma(2 1)= 0.00000000E+00
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== END DATASET(S) ==============================================================
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================================================================================
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-outvars: echo values of variables after computation --------
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acell 1.0000000000E+01 1.0000000000E+01 1.0000000000E+01 Bohr
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amu 1.00000000E+00
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densty 1.10000000E+00
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diemac 1.50000000E+00
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ecut 1.20000000E+00 Hartree
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etotal -6.9268611061E+00
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fcart -2.3767314202E-13 -7.8803378502E-13 -7.0706584883E-01
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2.3767314202E-13 7.8803378502E-13 7.0706584883E-01
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- fftalg 512
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ixc 3
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kpt 0.00000000E+00 0.00000000E+00 -3.75000000E-01
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0.00000000E+00 0.00000000E+00 -1.25000000E-01
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0.00000000E+00 0.00000000E+00 1.25000000E-01
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0.00000000E+00 0.00000000E+00 3.75000000E-01
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kptopt 0
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mixalch 0.00000000E+00 1.00000000E+00
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P mkmem 4
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natom 2
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nband 4
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ngfft 16 16 16
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nkpt 4
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npsp 2
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nsym 1
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ntypalch 1
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ntypat 1
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occ 2.000000 2.000000 2.000000 2.000000
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spgroup 1
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strten 4.2042071067E-04 4.2042071065E-04 -1.7262809752E-03
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3.9058238732E-15 0.0000000000E+00 0.0000000000E+00
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tolwfr 1.00000000E-22
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typat 1 1
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wtk 0.25000 0.25000 0.25000 0.25000
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xangst 0.0000000000E+00 0.0000000000E+00 -7.9376581289E-01
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0.0000000000E+00 0.0000000000E+00 7.9376581289E-01
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xcart 0.0000000000E+00 0.0000000000E+00 -1.5000000000E+00
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0.0000000000E+00 0.0000000000E+00 1.5000000000E+00
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xred 0.0000000000E+00 0.0000000000E+00 -1.5000000000E-01
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0.0000000000E+00 0.0000000000E+00 1.5000000000E-01
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ziontypat 4.00000000E+00
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znucl 32.00000 14.00000
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================================================================================
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The spacegroup number, the magnetic point group, and/or the number of symmetries
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have changed between the initial recognition based on the input file
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and a postprocessing based on the final acell, rprim, and xred.
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More details in the log file.
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- Timing analysis has been suppressed with timopt=0
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================================================================================
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Suggested references for the acknowledgment of ABINIT usage.
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The users of ABINIT have little formal obligations with respect to the ABINIT group
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(those specified in the GNU General Public License, http://www.gnu.org/copyleft/gpl.txt).
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However, it is common practice in the scientific literature,
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to acknowledge the efforts of people that have made the research possible.
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In this spirit, please find below suggested citations of work written by ABINIT developers,
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corresponding to implementations inside of ABINIT that you have used in the present run.
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Note also that it will be of great value to readers of publications presenting these results,
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to read papers enabling them to understand the theoretical formalism and details
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of the ABINIT implementation.
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For information on why they are suggested, see also https://docs.abinit.org/theory/acknowledgments.
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-
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- [1] The Abinit project: Impact, environment and recent developments.
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- Computer Phys. Comm. 248, 107042 (2020).
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- X.Gonze, B. Amadon, G. Antonius, F.Arnardi, L.Baguet, J.-M.Beuken,
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- J.Bieder, F.Bottin, J.Bouchet, E.Bousquet, N.Brouwer, F.Bruneval,
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- G.Brunin, T.Cavignac, J.-B. Charraud, Wei Chen, M.Cote, S.Cottenier,
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- J.Denier, G.Geneste, Ph.Ghosez, M.Giantomassi, Y.Gillet, O.Gingras,
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- D.R.Hamann, G.Hautier, Xu He, N.Helbig, N.Holzwarth, Y.Jia, F.Jollet,
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- W.Lafargue-Dit-Hauret, K.Lejaeghere, M.A.L.Marques, A.Martin, C.Martins,
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- H.P.C. Miranda, F.Naccarato, K. Persson, G.Petretto, V.Planes, Y.Pouillon,
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- S.Prokhorenko, F.Ricci, G.-M.Rignanese, A.H.Romero, M.M.Schmitt, M.Torrent,
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- M.J.van Setten, B.Van Troeye, M.J.Verstraete, G.Zerah and J.W.Zwanzig
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- Comment: the fifth generic paper describing the ABINIT project.
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- Note that a version of this paper, that is not formatted for Computer Phys. Comm.
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- is available at https://www.abinit.org/sites/default/files/ABINIT20.pdf .
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- The licence allows the authors to put it on the Web.
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- DOI and bibtex: see https://docs.abinit.org/theory/bibliography/#gonze2020
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-
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- [2] ABINIT: Overview, and focus on selected capabilities
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- J. Chem. Phys. 152, 124102 (2020).
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- A. Romero, D.C. Allan, B. Amadon, G. Antonius, T. Applencourt, L.Baguet,
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- J.Bieder, F.Bottin, J.Bouchet, E.Bousquet, F.Bruneval,
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- G.Brunin, D.Caliste, M.Cote,
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- J.Denier, C. Dreyer, Ph.Ghosez, M.Giantomassi, Y.Gillet, O.Gingras,
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- D.R.Hamann, G.Hautier, F.Jollet, G. Jomard,
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- A.Martin,
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- H.P.C. Miranda, F.Naccarato, G.Petretto, N.A. Pike, V.Planes,
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- S.Prokhorenko, T. Rangel, F.Ricci, G.-M.Rignanese, M.Royo, M.Stengel, M.Torrent,
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- M.J.van Setten, B.Van Troeye, M.J.Verstraete, J.Wiktor, J.W.Zwanziger, and X.Gonze.
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- Comment: a global overview of ABINIT, with focus on selected capabilities .
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- Note that a version of this paper, that is not formatted for J. Chem. Phys
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- is available at https://www.abinit.org/sites/default/files/ABINIT20_JPC.pdf .
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- The licence allows the authors to put it on the Web.
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- DOI and bibtex: see https://docs.abinit.org/theory/bibliography/#romero2020
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-
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- [3] Recent developments in the ABINIT software package.
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- Computer Phys. Comm. 205, 106 (2016).
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- X.Gonze, F.Jollet, F.Abreu Araujo, D.Adams, B.Amadon, T.Applencourt,
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- C.Audouze, J.-M.Beuken, J.Bieder, A.Bokhanchuk, E.Bousquet, F.Bruneval
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- D.Caliste, M.Cote, F.Dahm, F.Da Pieve, M.Delaveau, M.Di Gennaro,
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- B.Dorado, C.Espejo, G.Geneste, L.Genovese, A.Gerossier, M.Giantomassi,
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- Y.Gillet, D.R.Hamann, L.He, G.Jomard, J.Laflamme Janssen, S.Le Roux,
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- A.Levitt, A.Lherbier, F.Liu, I.Lukacevic, A.Martin, C.Martins,
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- M.J.T.Oliveira, S.Ponce, Y.Pouillon, T.Rangel, G.-M.Rignanese,
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- A.H.Romero, B.Rousseau, O.Rubel, A.A.Shukri, M.Stankovski, M.Torrent,
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- M.J.Van Setten, B.Van Troeye, M.J.Verstraete, D.Waroquier, J.Wiktor,
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- B.Xu, A.Zhou, J.W.Zwanziger.
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- Comment: the fourth generic paper describing the ABINIT project.
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- Note that a version of this paper, that is not formatted for Computer Phys. Comm.
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- is available at https://www.abinit.org/sites/default/files/ABINIT16.pdf .
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- The licence allows the authors to put it on the Web.
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- DOI and bibtex: see https://docs.abinit.org/theory/bibliography/#gonze2016
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-
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- And optionally:
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-
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- [4] ABINIT: First-principles approach of materials and nanosystem properties.
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- Computer Phys. Comm. 180, 2582-2615 (2009).
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- X. Gonze, B. Amadon, P.-M. Anglade, J.-M. Beuken, F. Bottin, P. Boulanger, F. Bruneval,
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- D. Caliste, R. Caracas, M. Cote, T. Deutsch, L. Genovese, Ph. Ghosez, M. Giantomassi
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- S. Goedecker, D.R. Hamann, P. Hermet, F. Jollet, G. Jomard, S. Leroux, M. Mancini, S. Mazevet,
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- M.J.T. Oliveira, G. Onida, Y. Pouillon, T. Rangel, G.-M. Rignanese, D. Sangalli, R. Shaltaf,
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- M. Torrent, M.J. Verstraete, G. Zerah, J.W. Zwanziger
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- Comment: the third generic paper describing the ABINIT project.
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- Note that a version of this paper, that is not formatted for Computer Phys. Comm.
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- is available at https://www.abinit.org/sites/default/files/ABINIT_CPC_v10.pdf .
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- The licence allows the authors to put it on the Web.
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- DOI and bibtex: see https://docs.abinit.org/theory/bibliography/#gonze2009
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-
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- Proc. 0 individual time (sec): cpu= 0.4 wall= 0.5
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================================================================================
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Calculation completed.
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.Delivered 18 WARNINGs and 7 COMMENTs to log file.
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+Overall time at end (sec) : cpu= 0.4 wall= 0.5
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