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.Version 10.1.4.5 of ABINIT, released Sep 2024.
.(MPI version, prepared for a x86_64_linux_gnu13.2 computer)
.Copyright (C) 1998-2025 ABINIT group .
ABINIT comes with ABSOLUTELY NO WARRANTY.
It is free software, and you are welcome to redistribute it
under certain conditions (GNU General Public License,
see ~abinit/COPYING or http://www.gnu.org/copyleft/gpl.txt).
ABINIT is a project of the Universite Catholique de Louvain,
Corning Inc. and other collaborators, see ~abinit/doc/developers/contributors.txt .
Please read https://docs.abinit.org/theory/acknowledgments for suggested
acknowledgments of the ABINIT effort.
For more information, see https://www.abinit.org .
.Starting date : Fri 13 Sep 2024.
- ( at 19h08 )
- input file -> /home/buildbot/ABINIT3/eos_gnu_13.2_mpich/trunk_merge-10.0/tests/TestBot_MPI1/v2_t02-t03/t02.abi
- output file -> t02.abo
- root for input files -> t02i
- root for output files -> t02o
Symmetries : space group P1 (# 1); Bravais aP (primitive triclinic)
================================================================================
Values of the parameters that define the memory need of the present run
intxc = 0 ionmov = 0 iscf = 7 lmnmax = 1
lnmax = 1 mgfft = 16 mpssoang = 1 mqgrid = 3001
natom = 2 nloc_mem = 1 nspden = 1 nspinor = 1
nsppol = 1 nsym = 1 n1xccc = 0 ntypat = 1
occopt = 1 xclevel = 1
- mband = 4 mffmem = 1 mkmem = 2
mpw = 69 nfft = 4096 nkpt = 2
================================================================================
P This job should need less than 1.540 Mbytes of memory.
Rough estimation (10% accuracy) of disk space for files :
_ WF disk file : 0.010 Mbytes ; DEN or POT disk file : 0.033 Mbytes.
================================================================================
--------------------------------------------------------------------------------
------------- Echo of variables that govern the present computation ------------
--------------------------------------------------------------------------------
-
- outvars: echo of selected default values
- iomode0 = 0 , fftalg0 =512 , wfoptalg0 = 0
-
- outvars: echo of global parameters not present in the input file
- max_nthreads = 0
-
-outvars: echo values of preprocessed input variables --------
acell 1.0000000000E+01 1.0000000000E+01 1.0000000000E+01 Bohr
amu 7.26100000E+01
diemac 1.50000000E+00
ecut 1.20000000E+00 Hartree
- fftalg 512
ixc 3
kpt 0.00000000E+00 0.00000000E+00 1.25000000E-01
0.00000000E+00 0.00000000E+00 3.75000000E-01
kptopt 0
P mkmem 2
natom 2
nband 4
ngfft 16 16 16
nkpt 2
nsym 1
ntypat 1
occ 2.000000 2.000000 2.000000 2.000000
spgroup 1
tolwfr 1.00000000E-22
typat 1 1
wtk 0.50000 0.50000
xangst 0.0000000000E+00 0.0000000000E+00 0.0000000000E+00
0.0000000000E+00 0.0000000000E+00 1.5875316258E+00
xcart 0.0000000000E+00 0.0000000000E+00 0.0000000000E+00
0.0000000000E+00 0.0000000000E+00 3.0000000000E+00
xred 0.0000000000E+00 0.0000000000E+00 0.0000000000E+00
0.0000000000E+00 0.0000000000E+00 3.0000000000E-01
znucl 32.00000
================================================================================
chkinp: Checking input parameters for consistency.
================================================================================
== DATASET 1 ==================================================================
- mpi_nproc: 1, omp_nthreads: -1 (-1 if OMP is not activated)
--- !DatasetInfo
iteration_state: {dtset: 1, }
dimensions: {natom: 2, nkpt: 2, mband: 4, nsppol: 1, nspinor: 1, nspden: 1, mpw: 69, }
cutoff_energies: {ecut: 1.2, pawecutdg: -1.0, }
electrons: {nelect: 8.00000000E+00, charge: 0.00000000E+00, occopt: 1.00000000E+00, tsmear: 1.00000000E-02, }
meta: {optdriver: 0, ionmov: 0, optcell: 0, iscf: 7, paral_kgb: 0, }
...
Exchange-correlation functional for the present dataset will be:
LDA: old Teter (4/91) fit to Ceperley-Alder data - ixc=3
Real(R)+Recip(G) space primitive vectors, cartesian coordinates (Bohr,Bohr^-1):
R(1)= 10.0000000 0.0000000 0.0000000 G(1)= 0.1000000 0.0000000 0.0000000
R(2)= 0.0000000 10.0000000 0.0000000 G(2)= 0.0000000 0.1000000 0.0000000
R(3)= 0.0000000 0.0000000 10.0000000 G(3)= 0.0000000 0.0000000 0.1000000
Unit cell volume ucvol= 1.0000000E+03 bohr^3
Angles (23,13,12)= 9.00000000E+01 9.00000000E+01 9.00000000E+01 degrees
getcut: wavevector= 0.0000 0.0000 0.0000 ngfft= 16 16 16
ecut(hartree)= 1.200 => boxcut(ratio)= 3.24462
getcut : COMMENT -
Note that boxcut > 2.2 ; recall that boxcut=Gcut(box)/Gcut(sphere) = 2
is sufficient for exact treatment of convolution.
Such a large boxcut is a waste : you could raise ecut
e.g. ecut= 3.158273 Hartrees makes boxcut=2
--- Pseudopotential description ------------------------------------------------
- pspini: atom type 1 psp file is /home/buildbot/ABINIT3/eos_gnu_13.2_mpich/trunk_merge-10.0/tests/Pspdir/32ge.SJ_mod
- pspatm: opening atomic psp file /home/buildbot/ABINIT3/eos_gnu_13.2_mpich/trunk_merge-10.0/tests/Pspdir/32ge.SJ_mod
- Starkloff-Joannopoulos local psp ( !!! OLD : only for tests)
- 32.00000 4.00000 900101 znucl, zion, pspdat
5 3 0 0 700 0.00000 pspcod,pspxc,lmax,lloc,mmax,r2well
1.000000E-06 2.603367E-02 r1 and al (Hamman grid)
0 0.000 0.000 0 1.0500000 l,e99.0,e99.9,nproj,rcpsp
0.00000000 0.00000000 0.00000000 0.00000000 rms, ekb1, ekb2, epsatm
0.00000000000000 0.00000000000000 0.00000000000000 rchrg,fchrg,qchrg
Note: local psp for atom with Z= 32.0
pspatm : epsatm= 27.96404307
--- l ekb(1:nproj) -->
pspatm: atomic psp has been read and splines computed
4.47424689E+02 ecore*ucvol(ha*bohr**3)
--------------------------------------------------------------------------------
_setup2: Arith. and geom. avg. npw (full set) are 67.000 66.970
================================================================================
--- !BeginCycle
iteration_state: {dtset: 1, }
solver: {iscf: 7, nstep: 30, nline: 4, wfoptalg: 0, }
tolerances: {tolwfr: 1.00E-22, }
...
iter Etot(hartree) deltaE(h) residm vres2
ETOT 1 -6.8258693495415 -6.826E+00 8.327E-04 7.396E+00
ETOT 2 -6.8432612126025 -1.739E-02 6.436E-08 1.835E-01
ETOT 3 -6.8434856616024 -2.244E-04 1.651E-06 8.394E-03
ETOT 4 -6.8434687175536 1.694E-05 1.152E-06 1.004E-02
ETOT 5 -6.8435101662013 -4.145E-05 5.320E-07 5.436E-04
ETOT 6 -6.8435122325119 -2.066E-06 2.011E-08 2.354E-06
ETOT 7 -6.8435122391818 -6.670E-09 5.842E-11 1.614E-08
ETOT 8 -6.8435122392487 -6.695E-11 7.808E-13 4.264E-10
ETOT 9 -6.8435122392510 -2.336E-12 5.954E-14 2.449E-11
ETOT 10 -6.8435122392512 -1.670E-13 2.266E-15 1.526E-12
ETOT 11 -6.8435122392512 2.753E-14 1.596E-16 1.033E-13
ETOT 12 -6.8435122392512 -2.132E-14 1.741E-17 1.464E-14
ETOT 13 -6.8435122392512 1.155E-14 1.420E-18 9.539E-16
ETOT 14 -6.8435122392512 -2.931E-14 3.843E-20 3.446E-17
ETOT 15 -6.8435122392512 3.109E-14 2.731E-21 1.095E-18
ETOT 16 -6.8435122392512 5.329E-15 9.797E-23 1.729E-19
At SCF step 16 max residual= 9.80E-23 < tolwfr= 1.00E-22 =>converged.
Cartesian components of stress tensor (hartree/bohr^3)
sigma(1 1)= 3.15153623E-04 sigma(3 2)= -4.39795668E-15
sigma(2 2)= 3.15153623E-04 sigma(3 1)= 0.00000000E+00
sigma(3 3)= -1.88255478E-03 sigma(2 1)= 0.00000000E+00
--- !ResultsGS
iteration_state: {dtset: 1, }
comment : Summary of ground state results
lattice_vectors:
- [ 10.0000000, 0.0000000, 0.0000000, ]
- [ 0.0000000, 10.0000000, 0.0000000, ]
- [ 0.0000000, 0.0000000, 10.0000000, ]
lattice_lengths: [ 10.00000, 10.00000, 10.00000, ]
lattice_angles: [ 90.000, 90.000, 90.000, ] # degrees, (23, 13, 12)
lattice_volume: 1.0000000E+03
convergence: {deltae: 5.329E-15, res2: 1.729E-19, residm: 9.797E-23, diffor: null, }
etotal : -6.84351224E+00
entropy : 0.00000000E+00
fermie : -1.67753978E-01
cartesian_stress_tensor: # hartree/bohr^3
- [ 3.15153623E-04, 0.00000000E+00, 0.00000000E+00, ]
- [ 0.00000000E+00, 3.15153623E-04, -4.39795668E-15, ]
- [ 0.00000000E+00, -4.39795668E-15, -1.88255478E-03, ]
pressure_GPa: 1.2281E+01
xred :
- [ 0.0000E+00, 0.0000E+00, 0.0000E+00, Ge]
- [ 0.0000E+00, 0.0000E+00, 3.0000E-01, Ge]
cartesian_forces: # hartree/bohr
- [ 1.02369562E-13, 2.28463695E-13, -7.37515400E-01, ]
- [ -1.02369562E-13, -2.28463695E-13, 7.37515400E-01, ]
force_length_stats: {min: 7.37515400E-01, max: 7.37515400E-01, mean: 7.37515400E-01, }
...
Integrated electronic density in atomic spheres:
------------------------------------------------
Atom Sphere_radius Integrated_density
1 2.00000 1.65407057
2 2.00000 1.60836339
================================================================================
----iterations are completed or convergence reached----
Mean square residual over all n,k,spin= 65.195E-24; max= 97.971E-24
reduced coordinates (array xred) for 2 atoms
0.000000000000 0.000000000000 0.000000000000
0.000000000000 0.000000000000 0.300000000000
rms dE/dt= 4.2580E+00; max dE/dt= 7.3752E+00; dE/dt below (all hartree)
1 0.000000000052 0.000000000013 7.375154123893
2 0.000000000054 0.000000000018 -7.375153877585
cartesian coordinates (angstrom) at end:
1 0.00000000000000 0.00000000000000 0.00000000000000
2 0.00000000000000 0.00000000000000 1.58753162577000
cartesian forces (hartree/bohr) at end:
1 0.00000000000010 0.00000000000023 -0.73751540007390
2 -0.00000000000010 -0.00000000000023 0.73751540007390
frms,max,avg= 4.2580471E-01 7.3751540E-01 -5.339E-12 -1.528E-12 -1.232E-08 h/b
cartesian forces (eV/Angstrom) at end:
1 0.00000000000526 0.00000000001175 -37.92456350783914
2 -0.00000000000526 -0.00000000001175 37.92456350783914
frms,max,avg= 2.1895757E+01 3.7924564E+01 -2.745E-10 -7.858E-11 -6.333E-07 e/A
length scales= 10.000000000000 10.000000000000 10.000000000000 bohr
= 5.291772085900 5.291772085900 5.291772085900 angstroms
prteigrs : about to open file t02o_EIG
Fermi (or HOMO) energy (hartree) = -0.16775 Average Vxc (hartree)= -0.17366
Eigenvalues (hartree) for nkpt= 2 k points:
kpt# 1, nband= 4, wtk= 0.50000, kpt= 0.0000 0.0000 0.1250 (reduced coord)
-0.47852 -0.22152 -0.17000 -0.17000
prteigrs : prtvol=0 or 1, do not print more k-points.
--- !EnergyTerms
iteration_state : {dtset: 1, }
comment : Components of total free energy in Hartree
kinetic : 2.48083560463286E+00
hartree : 2.42462174861058E+00
xc : -2.12952416432491E+00
Ewald energy : -3.40312010772530E+00
psp_core : 4.47424689112462E-01
local_psp : -6.66375000955687E+00
non_local_psp : 0.00000000000000E+00
total_energy : -6.84351223925118E+00
total_energy_eV : -1.86221438492872E+02
band_energy : -2.10890393901723E+00
...
Cartesian components of stress tensor (hartree/bohr^3)
sigma(1 1)= 3.15153623E-04 sigma(3 2)= -4.39795668E-15
sigma(2 2)= 3.15153623E-04 sigma(3 1)= 0.00000000E+00
sigma(3 3)= -1.88255478E-03 sigma(2 1)= 0.00000000E+00
-Cartesian components of stress tensor (GPa) [Pressure= 1.2281E+01 GPa]
- sigma(1 1)= 9.27213816E+00 sigma(3 2)= -1.29392331E-10
- sigma(2 2)= 9.27213816E+00 sigma(3 1)= 0.00000000E+00
- sigma(3 3)= -5.53866644E+01 sigma(2 1)= 0.00000000E+00
== END DATASET(S) ==============================================================
================================================================================
-outvars: echo values of variables after computation --------
acell 1.0000000000E+01 1.0000000000E+01 1.0000000000E+01 Bohr
amu 7.26100000E+01
diemac 1.50000000E+00
ecut 1.20000000E+00 Hartree
etotal -6.8435122393E+00
fcart 1.0236956173E-13 2.2846369484E-13 -7.3751540007E-01
-1.0236956173E-13 -2.2846369484E-13 7.3751540007E-01
- fftalg 512
ixc 3
kpt 0.00000000E+00 0.00000000E+00 1.25000000E-01
0.00000000E+00 0.00000000E+00 3.75000000E-01
kptopt 0
P mkmem 2
natom 2
nband 4
ngfft 16 16 16
nkpt 2
nsym 1
ntypat 1
occ 2.000000 2.000000 2.000000 2.000000
spgroup 1
strten 3.1515362342E-04 3.1515362341E-04 -1.8825547753E-03
-4.3979566817E-15 0.0000000000E+00 0.0000000000E+00
tolwfr 1.00000000E-22
typat 1 1
wtk 0.50000 0.50000
xangst 0.0000000000E+00 0.0000000000E+00 0.0000000000E+00
0.0000000000E+00 0.0000000000E+00 1.5875316258E+00
xcart 0.0000000000E+00 0.0000000000E+00 0.0000000000E+00
0.0000000000E+00 0.0000000000E+00 3.0000000000E+00
xred 0.0000000000E+00 0.0000000000E+00 0.0000000000E+00
0.0000000000E+00 0.0000000000E+00 3.0000000000E-01
znucl 32.00000
================================================================================
The spacegroup number, the magnetic point group, and/or the number of symmetries
have changed between the initial recognition based on the input file
and a postprocessing based on the final acell, rprim, and xred.
More details in the log file.
- Timing analysis has been suppressed with timopt=0
================================================================================
Suggested references for the acknowledgment of ABINIT usage.
The users of ABINIT have little formal obligations with respect to the ABINIT group
(those specified in the GNU General Public License, http://www.gnu.org/copyleft/gpl.txt).
However, it is common practice in the scientific literature,
to acknowledge the efforts of people that have made the research possible.
In this spirit, please find below suggested citations of work written by ABINIT developers,
corresponding to implementations inside of ABINIT that you have used in the present run.
Note also that it will be of great value to readers of publications presenting these results,
to read papers enabling them to understand the theoretical formalism and details
of the ABINIT implementation.
For information on why they are suggested, see also https://docs.abinit.org/theory/acknowledgments.
-
- [1] The Abinit project: Impact, environment and recent developments.
- Computer Phys. Comm. 248, 107042 (2020).
- X.Gonze, B. Amadon, G. Antonius, F.Arnardi, L.Baguet, J.-M.Beuken,
- J.Bieder, F.Bottin, J.Bouchet, E.Bousquet, N.Brouwer, F.Bruneval,
- G.Brunin, T.Cavignac, J.-B. Charraud, Wei Chen, M.Cote, S.Cottenier,
- J.Denier, G.Geneste, Ph.Ghosez, M.Giantomassi, Y.Gillet, O.Gingras,
- D.R.Hamann, G.Hautier, Xu He, N.Helbig, N.Holzwarth, Y.Jia, F.Jollet,
- W.Lafargue-Dit-Hauret, K.Lejaeghere, M.A.L.Marques, A.Martin, C.Martins,
- H.P.C. Miranda, F.Naccarato, K. Persson, G.Petretto, V.Planes, Y.Pouillon,
- S.Prokhorenko, F.Ricci, G.-M.Rignanese, A.H.Romero, M.M.Schmitt, M.Torrent,
- M.J.van Setten, B.Van Troeye, M.J.Verstraete, G.Zerah and J.W.Zwanzig
- Comment: the fifth generic paper describing the ABINIT project.
- Note that a version of this paper, that is not formatted for Computer Phys. Comm.
- is available at https://www.abinit.org/sites/default/files/ABINIT20.pdf .
- The licence allows the authors to put it on the Web.
- DOI and bibtex: see https://docs.abinit.org/theory/bibliography/#gonze2020
-
- [2] ABINIT: Overview, and focus on selected capabilities
- J. Chem. Phys. 152, 124102 (2020).
- A. Romero, D.C. Allan, B. Amadon, G. Antonius, T. Applencourt, L.Baguet,
- J.Bieder, F.Bottin, J.Bouchet, E.Bousquet, F.Bruneval,
- G.Brunin, D.Caliste, M.Cote,
- J.Denier, C. Dreyer, Ph.Ghosez, M.Giantomassi, Y.Gillet, O.Gingras,
- D.R.Hamann, G.Hautier, F.Jollet, G. Jomard,
- A.Martin,
- H.P.C. Miranda, F.Naccarato, G.Petretto, N.A. Pike, V.Planes,
- S.Prokhorenko, T. Rangel, F.Ricci, G.-M.Rignanese, M.Royo, M.Stengel, M.Torrent,
- M.J.van Setten, B.Van Troeye, M.J.Verstraete, J.Wiktor, J.W.Zwanziger, and X.Gonze.
- Comment: a global overview of ABINIT, with focus on selected capabilities .
- Note that a version of this paper, that is not formatted for J. Chem. Phys
- is available at https://www.abinit.org/sites/default/files/ABINIT20_JPC.pdf .
- The licence allows the authors to put it on the Web.
- DOI and bibtex: see https://docs.abinit.org/theory/bibliography/#romero2020
-
- [3] Recent developments in the ABINIT software package.
- Computer Phys. Comm. 205, 106 (2016).
- X.Gonze, F.Jollet, F.Abreu Araujo, D.Adams, B.Amadon, T.Applencourt,
- C.Audouze, J.-M.Beuken, J.Bieder, A.Bokhanchuk, E.Bousquet, F.Bruneval
- D.Caliste, M.Cote, F.Dahm, F.Da Pieve, M.Delaveau, M.Di Gennaro,
- B.Dorado, C.Espejo, G.Geneste, L.Genovese, A.Gerossier, M.Giantomassi,
- Y.Gillet, D.R.Hamann, L.He, G.Jomard, J.Laflamme Janssen, S.Le Roux,
- A.Levitt, A.Lherbier, F.Liu, I.Lukacevic, A.Martin, C.Martins,
- M.J.T.Oliveira, S.Ponce, Y.Pouillon, T.Rangel, G.-M.Rignanese,
- A.H.Romero, B.Rousseau, O.Rubel, A.A.Shukri, M.Stankovski, M.Torrent,
- M.J.Van Setten, B.Van Troeye, M.J.Verstraete, D.Waroquier, J.Wiktor,
- B.Xu, A.Zhou, J.W.Zwanziger.
- Comment: the fourth generic paper describing the ABINIT project.
- Note that a version of this paper, that is not formatted for Computer Phys. Comm.
- is available at https://www.abinit.org/sites/default/files/ABINIT16.pdf .
- The licence allows the authors to put it on the Web.
- DOI and bibtex: see https://docs.abinit.org/theory/bibliography/#gonze2016
-
- And optionally:
-
- [4] ABINIT: First-principles approach of materials and nanosystem properties.
- Computer Phys. Comm. 180, 2582-2615 (2009).
- X. Gonze, B. Amadon, P.-M. Anglade, J.-M. Beuken, F. Bottin, P. Boulanger, F. Bruneval,
- D. Caliste, R. Caracas, M. Cote, T. Deutsch, L. Genovese, Ph. Ghosez, M. Giantomassi
- S. Goedecker, D.R. Hamann, P. Hermet, F. Jollet, G. Jomard, S. Leroux, M. Mancini, S. Mazevet,
- M.J.T. Oliveira, G. Onida, Y. Pouillon, T. Rangel, G.-M. Rignanese, D. Sangalli, R. Shaltaf,
- M. Torrent, M.J. Verstraete, G. Zerah, J.W. Zwanziger
- Comment: the third generic paper describing the ABINIT project.
- Note that a version of this paper, that is not formatted for Computer Phys. Comm.
- is available at https://www.abinit.org/sites/default/files/ABINIT_CPC_v10.pdf .
- The licence allows the authors to put it on the Web.
- DOI and bibtex: see https://docs.abinit.org/theory/bibliography/#gonze2009
-
- Proc. 0 individual time (sec): cpu= 0.3 wall= 0.3
================================================================================
Calculation completed.
.Delivered 16 WARNINGs and 9 COMMENTs to log file.
+Overall time at end (sec) : cpu= 0.3 wall= 0.3
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