* Don't import libs to check they are available
* Don't import integrations at init
* Add importlib_metdata to deps
* Remove old vars references
* Avoid syntax error
* Adapt testing utils
* Try to appease torchhub
* Add dependency
* Remove more private variables
* Fix typo
* Another typo
* Refine the tf availability test
setuptools has a pretty fixed expectation of version numbers.
This PR fixes the dev version number and adds a comment with correct formats for the future editors
This fix removes this warning on `make fixup|style|etc` or any other time `setup.py` is being run.
```
setuptools/dist.py:452: UserWarning: Normalizing '4.2.0dev0' to '4.2.0.dev0'
warnings.warn(tmpl.format(**locals()))
```
and the alternative:
```
/setuptools/dist.py:452: UserWarning: Normalizing '4.0.0-rc-1' to '4.0.0rc1
```
Fixes: #8749
@LysandreJik, @sgugger
* implement support for run-time dependency version checking
* try not escaping !
* use findall that works on py36
* small tweaks
* autoformatter worship
* simplify
* shorter names
* add support for non-versioned checks
* add deps
* revert
* tokenizers not required, check version only if installed
* make a proper distutils cmd and add make target
* tqdm must be checked before tokenizers
* workaround the DistributionNotFound peculiar setup
* handle the rest of packages in setup.py
* fully sync setup.py's install_requires - to check them all
* nit
* make install_requires more readable
* typo
* Update setup.py
Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com>
* restyle
* add types
* simplify
* simplify2
Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com>
* Fixing roberta for slow-fast tests
* WIP getting equivalence on pipelines
* slow-to-fast equivalence - working on question-answering pipeline
* optional FAISS tests
* Pipeline Q&A
* Move pipeline tests to their own test job again
* update tokenizer to add sequence id methods
* update to tokenizers 0.9.4
* set sentencepiecce as optional
* clean up squad
* clean up pipelines to use sequence_ids
* style/quality
* wording
* Switch to use_fast = True by default
* update tests for use_fast at True by default
* fix rag tokenizer test
* removing protobuf from required dependencies
* fix NER test for use_fast = True by default
* fixing example tests (Q&A examples use slow tokenizers for now)
* protobuf in main deps extras["sentencepiece"] and example deps
* fix protobug install test
* try to fix seq2seq by switching to slow tokenizers for now
* Update src/transformers/tokenization_utils_base.py
Co-authored-by: Lysandre Debut <lysandre@huggingface.co>
* Update src/transformers/tokenization_utils_base.py
Co-authored-by: Lysandre Debut <lysandre@huggingface.co>
Co-authored-by: Lysandre Debut <lysandre@huggingface.co>
* WIP flax bert
* Initial commit Bert Jax/Flax implementation.
* Embeddings working and equivalent to PyTorch.
* Move embeddings in its own module BertEmbeddings
* Added jax.jit annotation on forward call
* BertEncoder on par with PyTorch ! :D
* Add BertPooler on par with PyTorch !!
* Working Jax+Flax implementation of BertModel with < 1e-5 differences on the last layer.
* Fix pooled output to take only the first token of the sequence.
* Refactoring to use BertConfig from transformers.
* Renamed FXBertModel to FlaxBertModel
* Model is now initialized in FlaxBertModel constructor and reused.
* WIP JaxPreTrainedModel
* Cleaning up the code of FlaxBertModel
* Added ability to load Flax model saved through save_pretrained()
* Added ability to convert Pytorch Bert model to FlaxBert
* FlaxBert can now load every Pytorch Bert model with on-the-fly conversion
* Fix hardcoded shape values in conversion scripts.
* Improve the way we handle LayerNorm conversion from PyTorch to Flax.
* Added positional embeddings as parameter of BertModel with default to np.arange.
* Let's roll FlaxRoberta !
* Fix missing position_ids parameters on predict for Bert
* Flax backend now supports batched inputs
Signed-off-by: Morgan Funtowicz <morgan@huggingface.co>
* Make it possible to load msgpacked model on convert from pytorch in last resort.
Signed-off-by: Morgan Funtowicz <morgan@huggingface.co>
* Moved save_pretrained to Jax base class along with more constructor parameters.
* Use specialized, model dependent conversion functio.
* Expose `is_flax_available` in file_utils.
* Added unittest for Flax models.
* Added run_tests_flax to the CI.
* Introduce FlaxAutoModel
* Added more unittests
* Flax model reference the _MODEL_ARCHIVE_MAP from PyTorch model.
* Addressing review comments.
* Expose seed in both Bert and Roberta
* Fix typo suggested by @stefan-it
Co-Authored-By: Stefan Schweter <stefan@schweter.it>
* Attempt to make style
* Attempt to make style in tests too
* Added jax & jaxlib to the flax optional dependencies.
* Attempt to fix flake8 warnings ...
* Redo black again and again
* When black and flake8 fight each other for a space ... 💥💥💥
* Try removing trailing comma to make both black and flake happy!
* Fix invalid is_<framework>_available call, thanks @LysandreJik 🎉
* Fix another invalid import in flax_roberta test
* Bump and pin flax release to 0.1.0.
* Make flake8 happy, remove unused jax import
* Change the type of the catch for msgpack.
* Remove unused import.
* Put seed as optional constructor parameter.
* trigger ci again
* Fix too much parameters in BertAttention.
* Formatting.
* Simplify Flax unittests to avoid machine crashes.
* Fix invalid number of arguments when raising issue for an unknown model.
* Address @bastings comment in PR, moving jax.jit decorated outside of __call__
* Fix incorrect path to require_flax/require_pytorch functions.
Signed-off-by: Morgan Funtowicz <funtowiczmo@gmail.com>
* Attempt to make style.
Signed-off-by: Morgan Funtowicz <funtowiczmo@gmail.com>
* Correct rebasing of circle-ci dependencies
Signed-off-by: Morgan Funtowicz <funtowiczmo@gmail.com>
* Fix import sorting.
Signed-off-by: Morgan Funtowicz <funtowiczmo@gmail.com>
* Fix unused imports.
Signed-off-by: Morgan Funtowicz <funtowiczmo@gmail.com>
* Again import sorting...
Signed-off-by: Morgan Funtowicz <funtowiczmo@gmail.com>
* Installing missing nlp dependency for flax unittests.
Signed-off-by: Morgan Funtowicz <funtowiczmo@gmail.com>
* Fix laoding of model for Flax implementations.
Signed-off-by: Morgan Funtowicz <funtowiczmo@gmail.com>
* jit the inner function call to make JAX-compatible
Signed-off-by: Morgan Funtowicz <funtowiczmo@gmail.com>
* Format !
Signed-off-by: Morgan Funtowicz <funtowiczmo@gmail.com>
* Flake one more time 🎶
Signed-off-by: Morgan Funtowicz <funtowiczmo@gmail.com>
* Rewrites BERT in Flax to the new Linen API (#7211)
* Rewrite Flax HuggingFace PR to Linen
* Some fixes
* Fix tests
* Fix CI with change of name of nlp (#7054)
* nlp -> datasets
* More nlp -> datasets
* Woopsie
* More nlp -> datasets
* One last
* Expose `is_flax_available` in file_utils.
* Added run_tests_flax to the CI.
* Attempt to make style
* trigger ci again
* Fix import sorting.
Signed-off-by: Morgan Funtowicz <funtowiczmo@gmail.com>
* Revert "Rewrites BERT in Flax to the new Linen API (#7211)"
This reverts commit 23703a5eb3364e26a1cbc3ee34b4710d86a674b0.
* Remove jnp.lax references
Signed-off-by: Morgan Funtowicz <funtowiczmo@gmail.com>
* Make style.
Signed-off-by: Morgan Funtowicz <funtowiczmo@gmail.com>
* Reintroduce Linen changes ...
Signed-off-by: Morgan Funtowicz <funtowiczmo@gmail.com>
* Make style.
Signed-off-by: Morgan Funtowicz <funtowiczmo@gmail.com>
* Use jax native's gelu function.
Signed-off-by: Morgan Funtowicz <funtowiczmo@gmail.com>
* Renaming BertModel to BertModule to highlight the fact this is the Flax Module object.
Signed-off-by: Morgan Funtowicz <funtowiczmo@gmail.com>
* Rewrite FlaxAutoModel test to not rely on pretrained_model_archive_map
Signed-off-by: Morgan Funtowicz <funtowiczmo@gmail.com>
* Remove unused variable in BertModule.
Signed-off-by: Morgan Funtowicz <funtowiczmo@gmail.com>
* Remove unused variable in BertModule again
Signed-off-by: Morgan Funtowicz <funtowiczmo@gmail.com>
* Attempt to have is_flax_available working again.
Signed-off-by: Morgan Funtowicz <funtowiczmo@gmail.com>
* Introduce JAX TensorType
Signed-off-by: Morgan Funtowicz <morgan@huggingface.co>
* Improve ImportError message when trying to convert to various TensorType format.
Signed-off-by: Morgan Funtowicz <morgan@huggingface.co>
* Makes Flax model jittable.
Signed-off-by: Morgan Funtowicz <morgan@huggingface.co>
* Ensure flax models are jittable in unittests.
Signed-off-by: Morgan Funtowicz <morgan@huggingface.co>
* Remove unused imports.
Signed-off-by: Morgan Funtowicz <funtowiczmo@gmail.com>
* Ensure jax imports are guarded behind is_flax_available.
Signed-off-by: Morgan Funtowicz <funtowiczmo@gmail.com>
* Make style.
Signed-off-by: Morgan Funtowicz <funtowiczmo@gmail.com>
* Make style again
Signed-off-by: Morgan Funtowicz <funtowiczmo@gmail.com>
* Make style again again
Signed-off-by: Morgan Funtowicz <funtowiczmo@gmail.com>
* Make style again again again
Signed-off-by: Morgan Funtowicz <funtowiczmo@gmail.com>
* Update src/transformers/file_utils.py
Co-authored-by: Marc van Zee <marcvanzee@gmail.com>
* Bump flax to it's latest version
Co-authored-by: Marc van Zee <marcvanzee@gmail.com>
* Bump jax version to at least 0.2.0
Signed-off-by: Morgan Funtowicz <funtowiczmo@gmail.com>
* Style.
Signed-off-by: Morgan Funtowicz <funtowiczmo@gmail.com>
* Update the unittest to use TensorType.JAX
Signed-off-by: Morgan Funtowicz <funtowiczmo@gmail.com>
* isort import in tests.
Signed-off-by: Morgan Funtowicz <funtowiczmo@gmail.com>
* Match new flax parameters name "params"
Signed-off-by: Morgan Funtowicz <funtowiczmo@gmail.com>
* Remove unused imports.
Signed-off-by: Morgan Funtowicz <funtowiczmo@gmail.com>
* Add flax models to transformers __init__
Signed-off-by: Morgan Funtowicz <funtowiczmo@gmail.com>
* Attempt to address all CI related comments.
Signed-off-by: Morgan Funtowicz <funtowiczmo@gmail.com>
* Correct circle.yml indent.
Signed-off-by: Morgan Funtowicz <funtowiczmo@gmail.com>
* Correct circle.yml indent (2)
Signed-off-by: Morgan Funtowicz <funtowiczmo@gmail.com>
* Remove coverage from flax tests
Signed-off-by: Morgan Funtowicz <funtowiczmo@gmail.com>
* Addressing many naming suggestions from comments
Signed-off-by: Morgan Funtowicz <funtowiczmo@gmail.com>
* Simplify for loop logic to interate over layers in FlaxBertLayerCollection
Signed-off-by: Morgan Funtowicz <funtowiczmo@gmail.com>
* use f-string syntax for formatting logs.
Signed-off-by: Morgan Funtowicz <funtowiczmo@gmail.com>
* Use config property from FlaxPreTrainedModel.
Signed-off-by: Morgan Funtowicz <funtowiczmo@gmail.com>
* use "cls_token" instead of "first_token" variable name.
Signed-off-by: Morgan Funtowicz <funtowiczmo@gmail.com>
* use "hidden_state" instead of "h" variable name.
Signed-off-by: Morgan Funtowicz <funtowiczmo@gmail.com>
* Correct class reference in docstring to link to Flax related modules.
Signed-off-by: Morgan Funtowicz <funtowiczmo@gmail.com>
* Added HF + Google Flax team copyright.
Signed-off-by: Morgan Funtowicz <funtowiczmo@gmail.com>
* Make Roberta independent from Bert
Signed-off-by: Morgan Funtowicz <funtowiczmo@gmail.com>
* Move activation functions to flax_utils.
Signed-off-by: Morgan Funtowicz <funtowiczmo@gmail.com>
* Move activation functions to flax_utils for bert.
Signed-off-by: Morgan Funtowicz <funtowiczmo@gmail.com>
* Added docstring for BERT
Signed-off-by: Morgan Funtowicz <funtowiczmo@gmail.com>
* Update import for Bert and Roberta tokenizers
Signed-off-by: Morgan Funtowicz <funtowiczmo@gmail.com>
* Make style.
Signed-off-by: Morgan Funtowicz <funtowiczmo@gmail.com>
* fix-copies
Signed-off-by: Morgan Funtowicz <funtowiczmo@gmail.com>
* Correct FlaxRobertaLayer to match PyTorch.
Signed-off-by: Morgan Funtowicz <funtowiczmo@gmail.com>
* Use the same store_artifact for flax unittest
Signed-off-by: Morgan Funtowicz <funtowiczmo@gmail.com>
* Style.
Signed-off-by: Morgan Funtowicz <funtowiczmo@gmail.com>
* Make sure gradient are disabled only locally for flax unittest using torch equivalence.
Signed-off-by: Morgan Funtowicz <funtowiczmo@gmail.com>
* Use relative imports
Signed-off-by: Morgan Funtowicz <funtowiczmo@gmail.com>
Co-authored-by: Stefan Schweter <stefan@schweter.it>
Co-authored-by: Marc van Zee <marcvanzee@gmail.com>
Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com>
* splitting fast and slow tokenizers [WIP]
* [WIP] splitting sentencepiece and tokenizers dependencies
* update dummy objects
* add name_or_path to models and tokenizers
* prefix added to file names
* prefix
* styling + quality
* spliting all the tokenizer files - sorting sentencepiece based ones
* update tokenizer version up to 0.9.0
* remove hard dependency on sentencepiece 🎉
* and removed hard dependency on tokenizers 🎉
* update conversion script
* update missing models
* fixing tests
* move test_tokenization_fast to main tokenization tests - fix bugs
* bump up tokenizers
* fix bert_generation
* update ad fix several tokenizers
* keep sentencepiece in deps for now
* fix funnel and deberta tests
* fix fsmt
* fix marian tests
* fix layoutlm
* fix squeezebert and gpt2
* fix T5 tokenization
* fix xlnet tests
* style
* fix mbart
* bump up tokenizers to 0.9.2
* fix model tests
* fix tf models
* fix seq2seq examples
* fix tests without sentencepiece
* fix slow => fast conversion without sentencepiece
* update auto and bert generation tests
* fix mbart tests
* fix auto and common test without tokenizers
* fix tests without tokenizers
* clean up tests lighten up when tokenizers + sentencepiece are both off
* style quality and tests fixing
* add sentencepiece to doc/examples reqs
* leave sentencepiece on for now
* style quality split hebert and fix pegasus
* WIP Herbert fast
* add sample_text_no_unicode and fix hebert tokenization
* skip FSMT example test for now
* fix style
* fix fsmt in example tests
* update following Lysandre and Sylvain's comments
* Update src/transformers/testing_utils.py
Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com>
* Update src/transformers/testing_utils.py
Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com>
* Update src/transformers/tokenization_utils_base.py
Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com>
* Update src/transformers/tokenization_utils_base.py
Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com>
Co-authored-by: Sylvain Gugger <35901082+sgugger@users.noreply.github.com>
* Import intergration libraries first
* isort and black happiness
* flake8 happiness
* Add a test
* Black reformat
* Ignore import order in tests
* A heavy-handed method of disabling comet for tests
* Remove comet_ml tests
* Run black on setup.py
* [WIP] SP tokenizers
* fixing tests for T5
* WIP tokenizers
* serialization
* update T5
* WIP T5 tokenization
* slow to fast conversion script
* Refactoring to move tokenzier implementations inside transformers
* Adding gpt - refactoring - quality
* WIP adding several tokenizers to the fast world
* WIP Roberta - moving implementations
* update to dev4 switch file loading to in-memory loading
* Updating and fixing
* advancing on the tokenizers - updating do_lower_case
* style and quality
* moving forward with tokenizers conversion and tests
* MBart, T5
* dumping the fast version of transformer XL
* Adding to autotokenizers + style/quality
* update init and space_between_special_tokens
* style and quality
* bump up tokenizers version
* add protobuf
* fix pickle Bert JP with Mecab
* fix newly added tokenizers
* style and quality
* fix bert japanese
* fix funnel
* limite tokenizer warning to one occurence
* clean up file
* fix new tokenizers
* fast tokenizers deep tests
* WIP adding all the special fast tests on the new fast tokenizers
* quick fix
* adding more fast tokenizers in the fast tests
* all tokenizers in fast version tested
* Adding BertGenerationFast
* bump up setup.py for CI
* remove BertGenerationFast (too early)
* bump up tokenizers version
* Clean old docstrings
* Typo
* Update following Lysandre comments
Co-authored-by: Sylvain Gugger <sylvain.gugger@gmail.com>
* added rag WIP
* path fix
* Formatting / renaming prior to actual work
* added rag WIP
* path fix
* Formatting / renaming prior to actual work
* added rag WIP
* path fix
* Formatting / renaming prior to actual work
* added rag WIP
* Formatting / renaming prior to actual work
* First commit
* improve comments
* Retrieval evaluation scripts
* refactor to include modeling outputs + MPI retriever
* Fix rag-token model + refactor
* Various fixes + finetuning logic
* use_bos fix
* Retrieval refactor
* Finetuning refactoring and cleanup
* Add documentation and cleanup
* Remove set_up_rag_env.sh file
* Fix retrieval wit HF index
* Fix import errors
* Fix quality errors
* Refactor as per suggestions in https://github.com/huggingface/transformers/pull/6813#issuecomment-687208867
* fix quality
* Fix RAG Sequence generation
* minor cleanup plus initial tests
* fix test
* fix tests 2
* Comments fix
* post-merge fixes
* Improve readme + post-rebase refactor
* Extra dependencied for tests
* Fix tests
* Fix tests 2
* Refactor test requirements
* Fix tests 3
* Post-rebase refactor
* rename nlp->datasets
* RAG integration tests
* add tokenizer to slow integration test and allow retriever to run on cpu
* add tests; fix position ids warning
* change structure
* change structure
* add from encoder generator
* save working solution
* make all integration tests pass
* add RagTokenizer.save/from_pretrained and RagRetriever.save/from_pretrained
* don't save paths
* delete unnecessary imports
* pass config to AutoTokenizer.from_pretrained for Rag tokenizers
* init wiki_dpr only once
* hardcode legacy index and passages paths (todo: add the right urls)
* finalize config
* finalize retriver api and config api
* LegacyIndex index download refactor
* add dpr to autotokenizer
* make from pretrained more flexible
* fix ragfortokengeneration
* small name changes in tokenizer
* add labels to models
* change default index name
* add retrieval tests
* finish token generate
* align test with previous version and make all tests pass
* add tests
* finalize tests
* implement thoms suggestions
* add first version of test
* make first tests work
* make retriever platform agnostic
* naming
* style
* add legacy index URL
* docstrings + simple retrieval test for distributed
* clean model api
* add doc_ids to retriever's outputs
* fix retrieval tests
* finish model outputs
* finalize model api
* fix generate problem for rag
* fix generate for other modles
* fix some tests
* save intermediate
* set generate to default
* big refactor generate
* delete rag_api
* correct pip faiss install
* fix auto tokenization test
* fix faiss install
* fix test
* move the distributed logic to examples
* model page
* docs
* finish tests
* fix dependencies
* fix import in __init__
* Refactor eval_rag and finetune scripts
* start docstring
* add psutil to test
* fix tf test
* move require torch to top
* fix retrieval test
* align naming
* finish automodel
* fix repo consistency
* test ragtokenizer save/load
* add rag model output docs
* fix ragtokenizer save/load from pretrained
* fix tokenizer dir
* remove torch in retrieval
* fix docs
* fixe finetune scripts
* finish model docs
* finish docs
* remove auto model for now
* add require torch
* remove solved todos
* integrate sylvains suggestions
* sams comments
* correct mistake on purpose
* improve README
* Add generation test cases
* fix rag token
* clean token generate
* fix test
* add note to test
* fix attention mask
* add t5 test for rag
* Fix handling prefix in finetune.py
* don't overwrite index_name
Co-authored-by: Patrick Lewis <plewis@fb.com>
Co-authored-by: Aleksandra Piktus <piktus@devfair0141.h2.fair>
Co-authored-by: Aleksandra Piktus <piktus@learnfair5102.h2.fair>
Co-authored-by: Aleksandra Piktus <piktus@learnfair5067.h2.fair>
Co-authored-by: Your Name <you@example.com>
Co-authored-by: Patrick von Platen <patrick.v.platen@gmail.com>
Co-authored-by: Quentin Lhoest <lhoest.q@gmail.com>
my flake8 wasn't up-to-date enough `make quality` wasn't reporting the same things CI did - this PR adds the actual required version.
Thinking more about some of these minimal versions - CI will always install afresh and thus will always run the latest version. Is there a way to tell pip to always install the latest versions of certain dependencies on `pip install -i ".[dev]"`, rather than hardcoding the minimals which quickly become outdated?
unittest doesn't support pytest's super-handy `@pytest.mark.parametrize`, I researched and there are many proposed workarounds, most tedious at best. If we include https://pypi.org/project/parameterized/ in dev dependencies - it will provide a very easy to write parameterization in tests. Same as pytest's fixture, plus quite a few other ways.
Example:
```
from parameterized import parameterized
@parameterized([
(2, 2, 4),
(2, 3, 8),
(1, 9, 1),
(0, 9, 0),
])
def test_pow(base, exponent, expected):
assert_equal(math.pow(base, exponent), expected)
```
(extra `self`var if inside a test class)
To remind the pytest style is slightly different:
```
@pytest.mark.parametrize("test_input,expected", [("3+5", 8), ("2+4", 6), ("6*9", 42)])
def test_eval(test_input, expected):
```
More examples here: https://pypi.org/project/parameterized
May I suggest that it will make it much easier to write some types of tests?
Lysandre